files:
Fibrosis_net_2.pdf

represent the network diagramms for depth=2 
and 4 cases each: GR, GrrplusGqr and friends/followers
(4 diagramms/pages per pdf file)

fibrosis.top => names of chosen 5 top nodes (plus some other technical 
info which is not important)

fibrosis.info => list of nodes with 4 columns:
Kg, used label, color number (out of five colors), short protein name

The used label is of the form TY, UY, DY or XY with Y being a number such that 
Kt/Ku/Kd/Kx=Y and T, U, D, X represent TGF/up/down/new X nodes.

The choice of top five nodes is done as:
top X according SDmaxtable: "X9 MMP-14"
2 top U nodes according SDmaxtable: C1QTNF3 and GALNT3
2 top D nodes according SDmaxtable: CLEC3B and SCARA5

Color attribution:
The four TGF nodes and the last 10 X-nodes have color of TGF-beta 1 (red).
For the other nodes there are two colors for up 
(green and olive) and two colors for down (blue and cyan) nodes.
For an up (or down) node the color choice is done by choosing 
the color of one of the two top PageRank nodes of the 
same group such that this node is a stronger follower for this 
corresponding top node (using the GrrplusGrq matrix).


Choice of top five nodes and color attribution can be modified if needed.
