Files in folder:
/users/frahm/dima/metacore2020/Fibrosis_New_Group_X10Main/Essentiel/

2Drank_mbnetwork_falseidsND_FibrosisT4U20D20X10Main_54_nospace.dat
=> table of K and K* Rank with full node names (with new X-names)

FibrosisT4U20D20X10Main_full.txt
=> list of full node names (with new X-names)

GR_mbnetwork_falseidsND.txt_1_FibrosisD20U20X122_0.15_166_SD.png
=> color plot of full SD(i,j) matrix defined as:

	SD(i,j) = 1/P(i) dP(i)/d\eps = influence of node-j to node-i
	with GR(i,j) -> GR(i,j)(1+\eps) and column sum renormalization of 
	column j of GR
	and other columns non modified
for the full intermediate GR-matrix of 164 nodes (with 122 Xnodes) 
used to determine to 10X nodes


GR_mbnetwork_falseidsND.txt_1_FibrosisT4U20D20X10Main_0.15_54_SD.png
=> color plot of full SD(i,j) matrix for the 54-GR matrix only using 
top 10X nodes


GR_mbnetwork_falseidsND.txt_1_FibrosisD20U20X122_0.15_166_SD.mat_box.png
=> reduced box-color plot of SD(i,j) with i in set of top 5 up and top 5 down 
(vertical axis) and j in set of 4 TGF and 10 X (horizontal axis)
using the full intermediate GR-matrix of 164 nodes (with 122 Xnodes)

GR_mbnetwork_falseidsND.txt_1_FibrosisT4U20D20X10Main_0.15_54_SD.mat_box.png
=> reduced box-color plot of SD(i,j) with i in set of top 5 up and top 5 down 
(vertical axis) and j in set of 4 TGF and 10 X (horizontal axis)
using 54-GR matrix only using top 10X nodes


SDmaxtable.txt
=> table of top 40 SD-values from SD(i,j) using 54-GR matrix 
with i in set of 4TGF+20up+20down and j in set of 10X

SDmaxtable_560.txt
=> table of top all 560 SD-values from SD(i,j) using 54-GR matrix 
with i in set of 20up+20down and j in set of 4TGF+10X


OXSDsumUpDown.txt:
=> table of \sum_{i in Up/Down} SD(i,j) for j in {TGF,X}

OXSDsumUpDownNice.txt
=> same as above but with a bit "nicer" presentation

SDsumTGFRank.txt
=> table of \sum_{j in TGF} SD(K_g,j) ordered by size giving new "K_s-Rank"
and for K_g in {set of Up/Down nodes}

fig_KsRank.pdf
=> figure of K_g versus K_s (for 4<=K_g<44, i.e. set of Up/Down nodes)
(this is a plot of 2nd column versus 1st column of SDsumTGFRank.txt)

fig_SDsumTGFvalue.pdf
=> figure of value of "\sum_{j in TGF} SD(K_g,j)" versus K_s
these values were used to determine the K_s-Rank
(this is a plot of 3rd column versus 1st column of SDsumTGFRank.txt)
