Explanation on divers Protein data and PageRank/magnetization files:

PPI.numbers_names:
list of protein names for single protein network 
with 2 columns for node number and node name


PPIdouble.numbers_names:
list of protein names for doubled Ising protein networks with 2 columns for 
node number and node name, i.e with (doubled) index values and names 
containing (+) and (-) attribute

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4 PageRank files: 4 columns for: Krank (or Kstar rank for Chei), value 
of PageRank (or CheiRank) vector, original index (depending on single/or 
doubled case), node name (also depending on single/or doubled case). The 
ordering is done with Krank or Kstar. 

pagerank_PPI.dat: 
PageRank of single protein network


pagerank_PPIdouble.dat
PageRank of double Ising protein network


pagerank_PPIChei.dat
CheiRank of single protein network


pagerank_PPICheidouble.dat
PageRank of doubled CheiRank Ising protein network:
Note that first the CheiRank is taken and then the 
doubling procedure is applied, i.e. if A=adjacency matrix of SINGLE network 
one takes A_Chei=A^T (transpose), then one constructs (A_chei)_doubled as 
described in the paper etc. (i.e. one MUST NOT use (A_doubled)^T which is very 
different from (A^T)_doubled !!).


2 files for Magnetization: M(j)=[P_+(j)-P_-(j)]/[P_+(j)+P_-(j)] 
in Krank order of single protein network with 5 columns:
Krank (single), Kstar (single), M(j), original index j, name of node j (single)

mag_PPI.dat:
=> M(j) computed from the PageRank of PPIdouble

mag_PPIChei.dat
=> M(j) computed from the CheiRank of PPICheidouble but 
order is still with (single) Krank of PPI and other columns are identical 
to mag_PPI.dat

