|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
15525570-SuppTable1
|
Human Ovarian Rae04 209genes
|
GeneSigDB
|
3.008E-5
|
1.344E-2
|
9.644E-2
|
2.211E-2
|
3
|
191
|
2
|
M672
|
Genes from common regions of gains observed in more than 15% of 148 primary breast cancer tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.656E-5
|
1.344E-2
|
9.644E-2
|
2.687E-2
|
2
|
27
|
3
|
16254190-Table1
|
Mouse Skin Zhang05 51genes
|
GeneSigDB
|
1.122E-4
|
2.749E-2
|
1.973E-1
|
8.248E-2
|
2
|
47
|
4
|
14993899-TableS1
|
Human Futreal04 427genes ConsensusCancerGenes
|
GeneSigDB
|
2.039E-4
|
2.843E-2
|
2.041E-1
|
1.499E-1
|
3
|
364
|
5
|
18722011-SuppTable2j
|
Human Leukemia Sanchez-Guijo08 77genes
|
GeneSigDB
|
2.791E-4
|
2.843E-2
|
2.041E-1
|
2.051E-1
|
2
|
74
|
6
|
16533764-Table3
|
Human Prostate Nadiminty06 110genes
|
GeneSigDB
|
2.867E-4
|
2.843E-2
|
2.041E-1
|
2.107E-1
|
2
|
75
|
7
|
M13522
|
Common down-regulated transcripts in fibroblasts expressing either XP/CS or TDD mutant forms of ERCC3 [GeneID=2071], after UVC irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.682E-4
|
2.843E-2
|
2.041E-1
|
3.442E-1
|
3
|
483
|
8
|
M12212
|
Down-regulated genes specific to esophageal adenocarcinoma (EAC) relative to normal tissue.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.193E-4
|
2.843E-2
|
2.041E-1
|
3.817E-1
|
2
|
101
|
9
|
M19076
|
Genes up-regulated in metastatic breast cancer tumors having type 2 amplification in the 20q13 region; involves MYBL2, STK6 and ZNF217 [GeneID=4605;6790;7764]
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.198E-4
|
2.843E-2
|
2.041E-1
|
5.290E-1
|
2
|
119
|
10
|
M1584
|
Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of v-MYB oncogenic varian of CMYB [GeneID=4602] off adenovirus vector.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.191E-4
|
2.843E-2
|
2.041E-1
|
6.020E-1
|
2
|
127
|
11
|
M3102
|
Genes up-regulated in the erbb2 subype of breast cancer samples, characterized by higher expression of ERBB2 [GeneID=2064].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.080E-3
|
2.843E-2
|
2.041E-1
|
7.939E-1
|
2
|
146
|
12
|
12747878-Table2
|
Human Breast Huang03 176genes LNmetastasis
|
GeneSigDB
|
1.200E-3
|
2.843E-2
|
2.041E-1
|
8.823E-1
|
2
|
154
|
13
|
M5659
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from patients with acute E. coli infection versus PBMC from patients with acute S. aureus infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.295E-3
|
2.843E-2
|
2.041E-1
|
9.517E-1
|
2
|
160
|
14
|
M15066
|
Genes up-regulated in MCF-7 cells (breast cancer) by overexpression of CMYB [GeneID=4602] off adenovirus vector.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.376E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
165
|
15
|
M6851
|
Genes up-regulated in spleens from mice immunized with ova peptides alone versus those immunized with LPS as adjuvant.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.393E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
166
|
16
|
M5657
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from patients with acute influenza infection versus PBMC from patients with acute S. pneumoniae infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.443E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
169
|
17
|
M5655
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from patients with acute influenza infection versus PBMC from patients with acute S. aureus infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.477E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
171
|
18
|
M6340
|
Genes up-regulated in Vd2 gamma delta T cells: untreated versus phorbol myristate acetate and ionomycin [PubChem=4792;3733].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.511E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
173
|
19
|
M2038
|
Genes up-regulated in APL (acute promyeolocytic leukemia) blasts expressing PML-RARA fusion [GeneID=5371;5914] compared to normal promyeloblasts.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.581E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
177
|
20
|
M8662
|
Genes down-regulated in bone marrow-derived macrophages: untreated versus stimulated by IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.652E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
181
|
21
|
16449976-SuppTable2
|
Human Esophagus Wang06 245genes
|
GeneSigDB
|
1.762E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
187
|
22
|
M2317
|
Genes up-regulated in DO11.10 cells (hybridoma) by expression of transciptionally activating form of HDAC7 [GeneID=51564] and down-regulated by its transcriptionally repressing form.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.894E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
194
|
23
|
M9824
|
Genes down-regulated in CD40L and IL-2 IL-4 IL-5 stimulated at day 3 B cell IRF4-KO versus CD40L and IL-2 IL-4 IL-5 stimulated at day 3 B cell wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.933E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
196
|
24
|
M8624
|
Genes down-regulated in bone marrow-derived dendritic cells CSF2 [GeneID=1437] versus CSF2 [GeneID=1437] and high dose of 1,3-beta-D-oligoglucan [PubChem=11375554].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.933E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
196
|
25
|
M3487
|
Genes up-regulated in naive CD4 [GeneID=920] T cells from adult blood versus thymic stromal cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.972E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
198
|
26
|
M5136
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from healthy donors versus PBMCs from infanct with acute RSV infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.972E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
198
|
27
|
M4714
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with R848 at 2 h versus DCs stimulated with LPS (TLR4 agonist) and R848 for 2 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.992E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
199
|
28
|
M5753
|
Genes up-regulated in comparison of control RAW264.7 cells (macrophages) versus those infected with B. abortus.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.992E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
199
|
29
|
M4058
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with LPS (TLR4 agonist) at 12 h versus DC cells stimulated with Gardiquimod (TLR7 agonist) at 12 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.992E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
199
|
30
|
M4031
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 16 h versus DC cells stimulated with Gardiquimod (TLR7 agonist) at 16 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
31
|
M3648
|
Genes up-regulated in comparison of unstimulated CD8 T cells at 72 h versus CD8 T cells at 72 h after treatment with trichostatin A (TSA) [PubChem=5562].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
32
|
M9352
|
Genes down-regulated in follicular B lymphocytes versus marginal zone B cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
33
|
M3377
|
Genes down-regulated in comparison of Th1 cells versus naive CD4 [GeneID=920] T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
34
|
M6044
|
Genes up-regulated in CD4 [GeneID=920] T cells: untreated (0h) versus activated by anti-CD3 and anti-CD28 and then stimulated by IL-12 (48h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
35
|
M8636
|
Genes up-regulated in bone marrow-derived dendritic cells: high dose of 1,3-beta-D-oligoglucan [PubChem=11375554] versus CSF2 [GeneID=1437] and high dose of 1,3-beta-D-oligoglucan [PubChem=11375554].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
36
|
M8653
|
Genes up-regulated in P14 CD8+ T cells: ST2 [GeneID=6761] knockout versus wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
37
|
M9895
|
Genes up-regulated in dendritic cells: untreated versus 24h after infection of Leishmania major.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
38
|
M3707
|
Genes up-regulated in comparison of control dendritic cells (DC) at 1 h versus those stimulated with poly(I:C) (TLR3 agonist) at 1 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
39
|
M3948
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 12 h versus DC cells stimulated with CpG DNA (TLR9 agonist) at 12 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
40
|
M3374
|
Genes down-regulated in comparison of Th1 cells versus Th17 cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
41
|
M299
|
Genes up-regulated in primary bronchial epithelial cells stimulated with: IL22 [GeneID=50616] versus IL17A [GeneID=3605].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
42
|
M3365
|
Genes down-regulated in comparison of Th2 cells versus naive CD4 [GeneID=620] T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
43
|
M7607
|
Genes down-regulated in CD11b+ cells from BALB/c mice bearing: C26GM colon carcinoma versus 4T1 mammary carcinoma.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
44
|
M5774
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from healthy donors versus PBMCs from patients with type 1 diabetes at the time of diagnosis.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
45
|
M8026
|
Genes up-regulated in macrophages (12h): rosiglitazone [PubChem=77999] and IL4 [GeneID=3565] versus IL4 [GeneID=3565].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
46
|
M6745
|
Genes down-regulated in cells from Flt3L Melanom injected mice: 33D1+ versus B lymphocytes.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
47
|
M3203
|
Genes up-regulated in comparison of pre-germinal center B cells versus dark zone germinal center B cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
48
|
M6021
|
Genes down-regulated in CD4 [GeneID=920] T cells: untreated (0h) versus activated by anti-CD3 and anti-CD28 and then stimulated by IL4 [GeneID=3565] (6h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
49
|
M9133
|
Genes down-regulated in T reg: GATA1 [GeneID=2623] knockout versus wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|
50
|
M6839
|
Genes up-regulated in CD4 [GeneID=920] T cells from lymph nodes: naïve versus day 28 after immunization.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.012E-3
|
2.843E-2
|
2.041E-1
|
1.000E0
|
2
|
200
|