|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
18049111-Table2
|
Human Viral Mas07 26genes
|
GeneSigDB
|
9.436E-6
|
4.454E-3
|
3.000E-2
|
4.454E-3
|
2
|
23
|
2
|
M5919
|
Genes up-regulated by activation of hedgehog signaling.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
2.347E-5
|
5.539E-3
|
3.730E-2
|
1.108E-2
|
2
|
36
|
3
|
21205295-TableS2
|
Mouse Viral Buonomo11 116genes
|
GeneSigDB
|
2.022E-4
|
2.912E-2
|
1.961E-1
|
9.543E-2
|
2
|
105
|
4
|
M1348
|
Genes up-regulated in the urogenital sinus (UGS) of day E16 females exposed to the androgen dihydrotestosterone [PubChem=10635] for 12 h.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.468E-4
|
2.912E-2
|
1.961E-1
|
1.165E-1
|
2
|
116
|
5
|
M2765
|
Genes down-regulated during late stages of differentiation of embryoid bodies from J1 embryonic stem cells.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
6.327E-4
|
3.136E-2
|
2.112E-1
|
2.986E-1
|
2
|
186
|
6
|
M2771
|
Genes down-regulated during late stages of differentiation of embryoid bodies from V6.5 embryonic stem cells.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
6.327E-4
|
3.136E-2
|
2.112E-1
|
2.986E-1
|
2
|
186
|
7
|
15501955-Table2
|
Human Breast Bieche04 3genes relapsed
|
GeneSigDB
|
6.482E-4
|
3.136E-2
|
2.112E-1
|
3.060E-1
|
1
|
3
|
8
|
M4914
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee at day 3 post-vaccination versus those at day 7 post-vaccination.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.950E-4
|
3.136E-2
|
2.112E-1
|
3.280E-1
|
2
|
195
|
9
|
M10091
|
Genes down-regulated in mucinous ovarian carcinoma tumors of low malignant potential (LMP) compared to normal ovarian surface epithelium tissue.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.236E-4
|
3.136E-2
|
2.112E-1
|
3.415E-1
|
2
|
199
|
10
|
M7159
|
Genes up-regulated in CD4 [GeneID=920] T cells treated with HDAC inhibitors: 2h versus 12h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
3.136E-2
|
2.112E-1
|
3.450E-1
|
2
|
200
|
11
|
M3209
|
Genes up-regulated in comparison of immature NK cells versus intermediate mature NK cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
3.136E-2
|
2.112E-1
|
3.450E-1
|
2
|
200
|
12
|
M2521
|
Loci bound by both isoforms (a and b) of SALL4 [GeneID=57167] in ES cells (embryonic stem).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.399E-4
|
3.697E-2
|
2.490E-1
|
4.436E-1
|
2
|
227
|
13
|
15173083-Table3
|
Human Brain Levy04 12genes
|
GeneSigDB
|
1.728E-3
|
4.963E-2
|
3.343E-1
|
8.155E-1
|
1
|
8
|
14
|
M1924
|
Genes up-regulated in partially reprogrammed and pluripotent cell populations (induced, iPS; and embryonic stem cells, ES) compared to parental lineage-commited cell lines.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.728E-3
|
4.963E-2
|
3.343E-1
|
8.155E-1
|
1
|
8
|
15
|
17533364-TableS3
|
Human Brain Lastowska07 548genes
|
GeneSigDB
|
1.971E-3
|
4.963E-2
|
3.343E-1
|
9.305E-1
|
2
|
330
|
16
|
18427120-DataS4
|
Human Breast Crawford08 971genes
|
GeneSigDB
|
2.340E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
2
|
360
|
17
|
17963910-Table2
|
Human Breast Rodningen08 18genes
|
GeneSigDB
|
3.238E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
15
|
18
|
19181379-Table1
|
Mouse Viral Pekova09 22genes
|
GeneSigDB
|
3.238E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
15
|
19
|
20460173-ImmPortCytokines
|
Human Immune Kong10 456genes ImmPort Cytokines
|
GeneSigDB
|
3.366E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
2
|
433
|
20
|
M15351
|
High-level amplifications detected in oral squamous cell carcinoma (OSCC) lines by array-CGH analysis.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.453E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
16
|
21
|
16007088-Table1
|
Human StemCell Weber05 18genes
|
GeneSigDB
|
3.669E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
17
|
22
|
17325667-Table1a
|
Human Stomach Mahadevan07 20genes OverExpressedGIST-RvsGIST-S
|
GeneSigDB
|
3.669E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
17
|
23
|
16203795-Table1
|
Human Bladder Blaveri05 29genes
|
GeneSigDB
|
3.884E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
18
|
24
|
M1388
|
Cluster 5 of genes distinguishing among different B lymphocyte neoplasms.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
18
|
25
|
18199535-SuppTable2
|
Human StemCell Amundson08 18genes
|
GeneSigDB
|
3.884E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
18
|
26
|
M14473
|
Genes identified as hypermethylated in SW48 cells (colon cancer).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
18
|
27
|
15520187-Table2b
|
Human Bladder Nicholson04 20genes Loss
|
GeneSigDB
|
4.100E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
19
|
28
|
M1350
|
Genes up-regulated in the urogenital sinus (UGS) of day E16 females exposed to the androgen dihydrotestosterone [PubChem=10635] for 48 h.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.239E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
2
|
487
|
29
|
M7657
|
Gene predicting resistance of the NCI-60 cell lines to gamma radiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
20
|
30
|
15173083-Table2
|
Human Brain Levy04 32genes
|
GeneSigDB
|
4.530E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
21
|
31
|
M7184
|
Genes up-regulated in glioblastoma cell lines displaying spherical growth (cluster-1) compared to those displaying semiadherent or adherent growth phenotype (cluster-2).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
21
|
32
|
M7346
|
Top 25 most highly expressed genes in embryonic carcinoma relative to seminoma tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.746E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
22
|
33
|
M18876
|
Top genes up-regulated in the GIST (gastrointestinal stromal tumor) cell line resistant to imatinib [PubChem=5291] compared to the parental cell line sensitive to the drug.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.961E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
23
|
34
|
M672
|
Genes from common regions of gains observed in more than 15% of 148 primary breast cancer tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.822E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
27
|
35
|
M8526
|
Protein profiles associated with survival in lung adenocarcinoma.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.822E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
27
|
36
|
16514666-Table2
|
Rat Immune Molloy06 46genes
|
GeneSigDB
|
6.037E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
28
|
37
|
16581771-table1
|
Mouse StemCell Si06 35genes
|
GeneSigDB
|
6.467E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
30
|
38
|
20458058-TableS3a
|
Human HeadandNeck Thurlow10 31genes
|
GeneSigDB
|
6.467E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
30
|
39
|
M15762
|
Neuroblastoma markers down-regulated in neuroblastoma cell lines expressing ESWR1-FLI1 [GeneID=2130;2313] fusion protein.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.467E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
30
|
40
|
M1291
|
Candidate mammary tumorigenesis genes from the common insertion sites (CIS) of MMTV virus that induced breast tumors in mice.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.682E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
31
|
41
|
15013775-Table1
|
Human Leukemia Fu04 32genes
|
GeneSigDB
|
6.682E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
31
|
42
|
18593912-Table1
|
Mouse StemCell Shachaf08 35genes
|
GeneSigDB
|
7.112E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
33
|
43
|
12086872-Table11d
|
Human Leukemia Yeoh02 40genes TEL-AML1
|
GeneSigDB
|
7.541E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
35
|
44
|
M13276
|
Genes down-regulated by IL2 [GeneID=3558] in cells derived from CD4+ [GeneID=920] cutaneous T-cell lymphoma (CTCL).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.756E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
36
|
45
|
17575140-Table1
|
Human Prostate Verona07 41genes
|
GeneSigDB
|
7.756E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
36
|
46
|
M1187
|
Genes down-regulated in MCF7 cells (breast cancer, normal TP53 [GeneID=7157]) undergoing mitotic arrest and apoptosis after treatment with 100 nM docetaxel [PubChem=148124].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
38
|
47
|
M2550
|
Genes distinguishing vincristine [PubChem=5978] resistant and sensitive B-lineage ALL; here - genes up-regulated in the drug resistant samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
38
|
48
|
15671244-Table1
|
Mouse Breast Eckhardt05 43genes
|
GeneSigDB
|
8.400E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
39
|
49
|
20458058-TableS3b
|
Human HeadandNeck Thurlow10 42genes
|
GeneSigDB
|
8.615E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
40
|
50
|
17060636-Table1
|
Mouse Lung not cancer Fulkerson06 45genes
|
GeneSigDB
|
8.615E-3
|
4.963E-2
|
3.343E-1
|
1.000E0
|
1
|
40
|