|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M3779
|
Genes down-regulated in comparison of control dendritic cells (DC) at 2 h versus those stimulated with Gardiquimod (TLR7 agonist) at 2 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.282E-6
|
2.990E-3
|
2.017E-2
|
2.990E-3
|
3
|
200
|
2
|
M2660
|
Genes up-regulated in late serum response of CRL 2091 cells (foreskin fibroblasts).
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
5.414E-4
|
2.046E-2
|
1.380E-1
|
2.577E-1
|
2
|
172
|
3
|
M8577
|
Genes down-regulated in MCF7 cells (breast cancer) engineered to conditionally express a dominant negative form of CLIM2 [GeneID=8861] by a Tet Off system.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.327E-4
|
2.046E-2
|
1.380E-1
|
3.011E-1
|
2
|
186
|
4
|
17150101-TableS1f
|
Human Breast Troester06 3genes-up DOX-ME16C
|
GeneSigDB
|
6.482E-4
|
2.046E-2
|
1.380E-1
|
3.085E-1
|
1
|
3
|
5
|
M4250
|
Genes down-regulated in comparison of CD4 [GeneID=920] T cells treated with IL4 [GeneID=3565] and anti-IL12 at 2 h versus those at 72 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.046E-2
|
1.380E-1
|
3.444E-1
|
2
|
199
|
6
|
M5513
|
Genes up-regulated in comparison of macrophages versus Th2 cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.046E-2
|
1.380E-1
|
3.444E-1
|
2
|
199
|
7
|
M3404
|
Genes up-regulated in comparison of control microglia cells versus those 6 h after stimulation with IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
8
|
M5474
|
Genes up-regulated in comparison of dendritic cells (DC) versus effector memory CD4 [GeneID=920] T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
9
|
M3971
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with Pam3Csk4 (TLR1/2 agonist) at 6 h versus DC cells stimulated with Gardiquimod (TLR7 agonist) at 6 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
10
|
M3716
|
Genes down-regulated in comparison of control dendritic cells (DC) at 6 h versus those stimulated with poly(I:C) (TLR3 agonist) at 6 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
11
|
M7276
|
Genes down-regulated in double positve thymocyte: TCF3 [GeneID=6929] knockout versus TCF3 and TCF12 [GeneID=6929;6938] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
12
|
M3765
|
Genes down-regulated in comparison of control dendritic cells (DC) at 6 h versus those stimulated with CpG DNA (TLR9 agonist) at 6 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
13
|
M4097
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 0.5 h versus those stimulated at 24 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
14
|
M5620
|
Genes up-regulated in comparison of CD4 [GeneID=920] T cells treated with TGFB3 [GeneID=7043] and IL6 [GeneID=3569] versus those treated with TGF3B [GeneID=7043], IL6 [GeneID=3569] and IL23A [GeneID=51561].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
15
|
M7232
|
Genes down-regulated in T cells treated with IL21 [GeneID=59067]: 1h versus 6h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
16
|
M3690
|
Genes down-regulated in comparison of control dendritic cells (DC) at 4 h versus those stimulated with LPS (TLR4 agonist) at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
17
|
M4073
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with LPS (TLR4 agonist) at 0.5 h versus those stimulated at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.046E-2
|
1.380E-1
|
3.479E-1
|
2
|
200
|
18
|
M9183
|
Pre-mitotic cell cycle regulators (CDC) identified in an shRNA screen of the ubiquitin pathway components.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.375E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
11
|
19
|
19325563-Table2b
|
Rat Heart GallegoDelgado09 19genes
|
GeneSigDB
|
2.591E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
12
|
20
|
M3990
|
Cluster d1: genes down-regulated in WS1 cells (fibroblast) at 6 h after irradiation with high dose UV-C.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
18
|
21
|
15388584-Table5
|
Human BoneMarrow Abraham05 20genes
|
GeneSigDB
|
3.884E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
18
|
22
|
M2051
|
Top genes associated with chemosensitivity to cyclophosphamide [PubChem=2907] across 85 tumor xenografts.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
18
|
23
|
M9880
|
Genes down-regulated in immunoglobulin light chain amyloidosis plasma cells (ALPC) compared to multiple myeloma (MM) cells.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.100E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
19
|
24
|
M9634
|
Cluster 4: genes changed in primary keratinocytes by UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
20
|
25
|
M16756
|
Genes down-regulated in primary keratinocytes at 6 h after UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
21
|
26
|
M6967
|
Up-regulated genes that separate angiogenic from non-angiogenic non-small cell lung carcinoma (NSCLC) samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
21
|
27
|
M8108
|
Genes up-regulated in MCF-7 cells (breast cancer) by selective estrogen receptor modulators (SERM) 4-hydroxytamoxifen, raloxifene, or ICI 182780 but not by estradiol [PubChem=44959;5035;3478439;5757].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.961E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
23
|
28
|
11694447-Figure4a
|
Human Lung not cancer Temple01 29genes
|
GeneSigDB
|
5.391E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
25
|
29
|
16232199-Table2
|
Human Brain Saigusa05 40genes
|
GeneSigDB
|
5.822E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
27
|
30
|
M5516
|
Top 40 genes from cluster 12 of acute myeloid leukemia (AML) expression profile; 89% of the samples are FAB M3 subtype, 95% bear the t(15;17) translocation, all have the PML-RARA fusion [GeneID=5371;5914]; indicate good survival.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.467E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
30
|
31
|
15896717-Table7
|
Human Leukemia Bal05 36genes
|
GeneSigDB
|
7.756E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
36
|
32
|
17213814-Table1
|
Human Ovarian Appierto07 41genes
|
GeneSigDB
|
7.971E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
37
|
33
|
M9538
|
Genes up-regulated in rectal but down-regulated in colon carcinoma compared to normal mucosa samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
38
|
34
|
16935118-Table1
|
Human Lung Gordon06 38genes
|
GeneSigDB
|
8.186E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
38
|
35
|
M1546
|
Genes up-regulated in A2780 cells (ovarian carcinoma) exposed to fenretinide [PubChem=1744].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
38
|
36
|
M1760
|
Genes down-regulated after Cre-lox knockout of LSD1 [GeneID=23028] in pituitary.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.400E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
39
|
37
|
M5957
|
Genes specifically up-regulated in pancreatic beta cells.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
8.615E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
40
|
38
|
M10850
|
Genes down-regulated in blister cells from patients with adverse drug reactions (ADR).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.473E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
44
|
39
|
14722241-Table1b
|
Human Lung Chen04 52genes
|
GeneSigDB
|
9.688E-3
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
45
|
40
|
16597596-TableS1-5
|
Human Leukemia Wilson06 50genes SigDifferentialClusterE
|
GeneSigDB
|
1.012E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
47
|
41
|
16188652-table1a
|
Human StemCell Shaughnessy05 51genes
|
GeneSigDB
|
1.055E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
49
|
42
|
14735469-Table2
|
Human Breast Zhao04 58genes
|
GeneSigDB
|
1.076E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
50
|
43
|
20368555-TS-3
|
Human Breast Barry10 52genes
|
GeneSigDB
|
1.076E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
50
|
44
|
16280042-GeneList
|
Human Breast Pawitan05 64genes prognosisGenes
|
GeneSigDB
|
1.097E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
51
|
45
|
16356477-Table1
|
Human Breast Song06 62genes
|
GeneSigDB
|
1.097E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
51
|
46
|
M12050
|
Genes up-regulated in hyppocampus of mice carrying a hemizygotic microdeletion in the 22q11.2 region.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.140E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
53
|
47
|
M2589
|
Cluster 2: genes changed in primary keratinocytes by UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.162E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
54
|
48
|
19965622-TableS2b
|
Human LymphaticEndothelialCells Norrmen09 65genes
|
GeneSigDB
|
1.183E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
55
|
49
|
16705456-Table2
|
Human Leukemia Cao06 56genes
|
GeneSigDB
|
1.204E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
56
|
50
|
M1541
|
Genes down-regulated in NIH 3T3 cells (fibroblasts) 24 h after inducing MyoD [GeneID=4654] differentiation program.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.226E-2
|
4.885E-2
|
3.294E-1
|
1.000E0
|
1
|
57
|