|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M9362
|
Cluster 4: genes down-regulated in lung tissue samples from mice with tumor-bearing genotypes (activated KRAS [GeneID=3845] alone or together with inactivated PTEN [GeneID=5728]).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.641E-4
|
1.738E-2
|
1.110E-1
|
8.793E-2
|
2
|
120
|
2
|
M7116
|
Genes up-regulated in CD4 [GeneID=920] T cells: control versus treated with halofuginone [PubChem=400772] for 3h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
4.457E-4
|
1.738E-2
|
1.110E-1
|
1.484E-1
|
2
|
156
|
3
|
M6593
|
Genes down-regulated upon CSF1 [GeneID=1435] treatment: monocytes (3 days) versus macrophages (7 days).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.739E-4
|
1.738E-2
|
1.110E-1
|
2.244E-1
|
2
|
192
|
4
|
M6227
|
Genes up-regulated in thymocytes: double positive versus CD4 [GeneID=920] single positive.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.739E-4
|
1.738E-2
|
1.110E-1
|
2.244E-1
|
2
|
192
|
5
|
M2861
|
Genes down-regulated in epithelial lung cancer cell lines over-expressing an oncogenic form of KRAS [Gene ID=3845] gene.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
6.879E-4
|
1.738E-2
|
1.110E-1
|
2.291E-1
|
2
|
194
|
6
|
M6234
|
Genes up-regulated in double negative thymocyte versus immature CD4 [GeneID=920] single positive cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.879E-4
|
1.738E-2
|
1.110E-1
|
2.291E-1
|
2
|
194
|
7
|
M6237
|
Genes down-regulated in CD4 [GeneID=920] single positive cells: immature versus thymocytes.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.950E-4
|
1.738E-2
|
1.110E-1
|
2.314E-1
|
2
|
195
|
8
|
M6217
|
Genes up-regulated in polymorphonuclear leukocytes (9h): control versus infection by A. phagocytophilum.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.950E-4
|
1.738E-2
|
1.110E-1
|
2.314E-1
|
2
|
195
|
9
|
M2817
|
Genes up-regulated in prefrontal cortex (PFC) of mice carrying a hemizygotic microdeletion in the 22q11.2 region.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.950E-4
|
1.738E-2
|
1.110E-1
|
2.314E-1
|
2
|
195
|
10
|
M9836
|
Genes up-regulated in at day 0 B cell IRF4-KO versus CD40L and IL-2 IL-4 IL-5 stimulated at day 3 B cell IRF4intermediate.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.738E-2
|
1.110E-1
|
2.434E-1
|
2
|
200
|
11
|
M3399
|
Genes down-regulated in comparison of induced regulatory T cell (Treg) versus natural regulatory T cell (Treg).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.738E-2
|
1.110E-1
|
2.434E-1
|
2
|
200
|
12
|
M8261
|
Genes down-regulated in B lymphocytes: wildtype versus NFATC1 [GeneID=4772] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.738E-2
|
1.110E-1
|
2.434E-1
|
2
|
200
|
13
|
M7075
|
Genes down-regulated in CD4 [GeneID=920] T cells from atopic patients: resting versus stimulated with allergen (house dust mite).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.738E-2
|
1.110E-1
|
2.434E-1
|
2
|
200
|
14
|
M9045
|
Genes up-regulated in T reg: untreated versus ZM 241385 [PubChem=176407].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.738E-2
|
1.110E-1
|
2.434E-1
|
2
|
200
|
15
|
17676974-TableS4
|
Mouse StemCell Chambers07 411genes
|
GeneSigDB
|
1.890E-3
|
4.195E-2
|
2.679E-1
|
6.292E-1
|
2
|
323
|
16
|
M15804
|
Examples of transcription factors whose activities are regulated by MAPK1 and MAPK3 [GeneID=5594;5595] phosphorylation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.591E-3
|
4.669E-2
|
2.982E-1
|
8.627E-1
|
1
|
12
|
17
|
M6267
|
An assortment of osteoblast transcriptional regulators.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.022E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
14
|
18
|
18927307-table2
|
Human Colon Allen08 16genes
|
GeneSigDB
|
3.022E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
14
|
19
|
M1562
|
Genes in cluster 2: moderately up-regulated in HFW cells (fibroblast) upon treatment with sodium arsenite [PubChem=26435] at all time points.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
18
|
20
|
16397240-Table1b
|
Human Colon Grade06 19genes
|
GeneSigDB
|
4.100E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
19
|
21
|
M4495
|
Substrates of PRKDC [GeneID=5591].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
20
|
22
|
15041723-Table2
|
Human Thyroid Yano04 27genes
|
GeneSigDB
|
4.961E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
23
|
23
|
20081105-Table4
|
Human Breast Nagaraja10 25genes mir-182Knockdown
|
GeneSigDB
|
5.176E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
24
|
24
|
M16374
|
Genes down-regulated during transition from G1 (well differentiated tumor, infected with HCV) to G2 (moderately differentiated tumor, infected with HCV) in the development of hepatocellular carcinoma.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.391E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
25
|
25
|
17284527-Table3
|
Human Lypmhoma Leval07 28genes
|
GeneSigDB
|
5.607E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
26
|
26
|
18977325-Figure5f
|
Human Leukemia Krivtsov08 36genes
|
GeneSigDB
|
7.112E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
33
|
27
|
M1545
|
Genes up-regulated in MMEC cells (myometrial endothelium) at 12 h after VEGFA [GeneID=7422] stimulation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.541E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
35
|
28
|
18812457-Table2
|
Mouse Viral Mercader08 51genes
|
GeneSigDB
|
7.541E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
35
|
29
|
M972
|
Up-regulated at 4 hours following treatment of mouse lymphocytes (TK 3.7.2C) with a high dose of methyl methanesulfonate (MMS)
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.756E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
36
|
30
|
M1558
|
Strongly down-regulated at 2 h during differentiation of 3T3-L1 cells (fibroblast) into adipocytes.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.756E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
36
|
31
|
M11048
|
Selected gradually up-regulated genes whose expression profile follows that of CCNE1 [GeneID=898] in the TLX1 [GeneID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.615E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
40
|
32
|
M4519
|
Neurologically relevant transcripts with highest abundance fold range in brain tissue among mouse strains.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.615E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
40
|
33
|
19922785-Table3
|
Human Leukemia Yang09 42genes
|
GeneSigDB
|
8.830E-3
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
41
|
34
|
19965622-TableS2b
|
Human LymphaticEndothelialCells Norrmen09 65genes
|
GeneSigDB
|
1.183E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
55
|
35
|
M1521
|
Genes up-regulated in MMEC cells (myometrial endothelium) at 6 h after VEGFA [GeneID=7422] stimulation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.269E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
59
|
36
|
M7899
|
Oxidative stress genes down-regulated in ARPE-19 cells (retinal pigmented epithelium) in response to HNE and tBH [PubChem=5283344;6410].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.290E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
60
|
37
|
M10880
|
Down-regulated genes classifying non-tumor lung tissues by age after incution of lung cancer by urethane injection [PubChem=5641]: early (24-26 weeks) vs late (46 weeks).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.311E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
61
|
38
|
17170073-TableS3
|
Mouse StemCell zurNieden07 81genes
|
GeneSigDB
|
1.504E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
70
|
39
|
M1965
|
Genes with low-CpG-density promoters (LCP) bearing the tri-methylation mark at H3K27 (H3K27me3) in MEF cells (embryonic fibroblasts).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.504E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
70
|
40
|
M1673
|
Genes up-regulated in MMEC cells (myometrial endothelium) at 3 h after VEGFA [GeneID=7422] stimulation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.589E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
74
|
41
|
M13387
|
Genes co-regulated in uterus during a time course response to progesterone [PubChem=5994]: SOM cluster 6.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.610E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
75
|
42
|
M5827
|
Genes up-regulated in non-metastatic breast cancer tumors having type 1 amplification in the 20q13 region; involves ZNF217 [GeneID=7764] locus only.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.653E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
77
|
43
|
M16458
|
Selected gradually up-regulated genes in the TLX1 [GeneID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.653E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
77
|
44
|
18927307-tableS4
|
Human Colon Allen08 124genes
|
GeneSigDB
|
1.674E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
78
|
45
|
11325847-Table2
|
Human Endometrial Matsushima-Nishiu01 97genes
|
GeneSigDB
|
1.674E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
78
|
46
|
18691415-Table5d
|
Human Colon Solmi08 94genes GbTreatment
|
GeneSigDB
|
1.674E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
78
|
47
|
15897889-Table4
|
Human Skin Kyng05 81genes
|
GeneSigDB
|
1.696E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
79
|
48
|
M12971
|
Genes specifically responding to gamma radiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.738E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
81
|
49
|
M1436
|
Genes up-regulated in day 6 embryoid bodies derived from embryonic stem cells (ES) with HEX [GeneID=3087] knockout.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.738E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
81
|
50
|
19965622-TableS1b
|
Human LymphaticEndothelialCells Norrmen09 99genes
|
GeneSigDB
|
1.887E-2
|
4.669E-2
|
2.982E-1
|
1.000E0
|
1
|
88
|