|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M2637
|
Molecular timetable composed of 96 time-indicating genes (103 probes) in the central (suprachiasmatic nucleus (SCN)) clock.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.831E-11
|
1.001E-7
|
7.622E-7
|
1.001E-7
|
5
|
88
|
2
|
M9547
|
Genes up-regulated dendritic cells: Ly6G+ versus Ly6G-.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.469E-7
|
3.668E-4
|
2.792E-3
|
7.335E-4
|
4
|
199
|
3
|
M18441
|
Genes down-regulated in samples with systolic heart failure compared to normal hearts.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.389E-6
|
5.249E-4
|
3.995E-3
|
1.575E-3
|
4
|
241
|
4
|
M16458
|
Selected gradually up-regulated genes in the TLX1 [GeneID=3195] Tet On iEBHX15-4 cells (pro-erythroblasts).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.934E-6
|
8.319E-4
|
6.332E-3
|
3.328E-3
|
3
|
77
|
5
|
M1243
|
Genes up-regulated by telomere shortening due to the knockout of TERC [GeneID=7012] in the presence of chronic liver damage.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.762E-6
|
8.531E-4
|
6.493E-3
|
4.266E-3
|
2
|
8
|
6
|
M12498
|
Molecular timetable composed of 162 time-indicating genes (182 probes) in the peripheral (liver) clock.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.114E-5
|
5.833E-3
|
4.440E-2
|
3.531E-2
|
3
|
169
|
7
|
M2445
|
Genes up-regulated in MEF cells (embryonic fibroblast) upon stimulation with TGFB1 [GeneID=7040] for 10 h.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.068E-5
|
5.833E-3
|
4.440E-2
|
5.747E-2
|
3
|
199
|
8
|
M6648
|
Genes down-regulated in bone marrow-derived macrophages at 45 min of stimulation by LPS: wildtype versus IL10 [GeneID=3486].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
5.144E-5
|
5.833E-3
|
4.440E-2
|
5.833E-2
|
3
|
200
|
9
|
M9851
|
Genes down-regulated in CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell IRF4intermediate versus CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
5.144E-5
|
5.833E-3
|
4.440E-2
|
5.833E-2
|
3
|
200
|
10
|
M8551
|
Genes up-regulated in CD8 T cells: KLRB1 high [GeneID=3820] versus KLRB1- [GeneID=3820].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
5.144E-5
|
5.833E-3
|
4.440E-2
|
5.833E-2
|
3
|
200
|
11
|
M1284
|
Cluster PAM6: genes changed exclusively in normal liver tissue adjacent to hepatocellular carcinoma (HCC) from mice deficient for TXNIP [GeneID=10628].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.380E-4
|
1.362E-2
|
1.036E-1
|
1.565E-1
|
2
|
46
|
12
|
16254190-Table1
|
Mouse Skin Zhang05 51genes
|
GeneSigDB
|
1.441E-4
|
1.362E-2
|
1.036E-1
|
1.634E-1
|
2
|
47
|
13
|
M3576
|
Genes down-regulated in the nucleus accumbens (a major reward center in the brain) 8 weeks after induction of CREB1 [GeneID=1385] expression in a transgenic Tet-Off system.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.123E-4
|
1.852E-2
|
1.410E-1
|
2.407E-1
|
2
|
57
|
14
|
M15193
|
Genes up-regulated in pancreatic ductal adenocarcinoma (PDAC) identified in a meta analysis across four independent studies.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.879E-4
|
2.332E-2
|
1.775E-1
|
3.265E-1
|
3
|
358
|
15
|
18722011-SuppTable2j
|
Human Leukemia Sanchez-Guijo08 77genes
|
GeneSigDB
|
3.581E-4
|
2.607E-2
|
1.984E-1
|
4.060E-1
|
2
|
74
|
16
|
M17500
|
Best cis-regulated quantitative trait loci (QTLs) in the mouse genome which modulate transcription in brain tissue.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.678E-4
|
2.607E-2
|
1.984E-1
|
4.171E-1
|
2
|
75
|
17
|
12509443-Table2
|
Human ProteinKinases Frevel03 425genes
|
GeneSigDB
|
3.929E-4
|
2.621E-2
|
1.995E-1
|
4.455E-1
|
3
|
398
|
18
|
M1278
|
Genes down-regulated in pulpal tissue extracted from carious teeth.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.395E-4
|
2.769E-2
|
2.108E-1
|
4.984E-1
|
2
|
82
|
19
|
M17923
|
Genes up-regulated in cultured stromal stem cells from adipose tissue, compared to the freshly isolated cells.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.761E-4
|
2.842E-2
|
2.163E-1
|
5.399E-1
|
3
|
425
|
20
|
15297395-SuppTable3
|
Human Lymphoma Sriuranpong04 170genes
|
GeneSigDB
|
8.618E-4
|
3.070E-2
|
2.337E-1
|
9.773E-1
|
2
|
115
|
21
|
15985538-TableS1
|
Mouse Leukemia Gery05 153genes
|
GeneSigDB
|
9.690E-4
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
122
|
22
|
M12338
|
Genes changed in NIH 3T3 cells (embryonic fibroblast) by expression of one or more of C/EBP proteins: CEBPA, CEBPB, CEBPG, and CEBPD [GeneID=1050;1051;1054;1052].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.033E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
126
|
23
|
M6346
|
Genes up-regulated in Vd2 gamma delta T cells: LPS versus phorbol myristate acetate and ionomycin [PubChem=4792;3733].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.133E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
132
|
24
|
21205295-TableS5
|
Mouse Viral Buonomo11 202genes
|
GeneSigDB
|
1.167E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
134
|
25
|
M2397
|
Genes up-regulated in liver tissue upon knockout of HNF1A [GeneID=6927].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.184E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
135
|
26
|
M18757
|
Genes up-regulated in HMLE cells (mmortalized nontransformed mammary epithelial) by expression of a dominant-negative form of E-cadhedrin (CDH1) [GeneID=999].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.273E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
140
|
27
|
M2693
|
Genes down-regulated in HEK293 cells (kidney fibroblasts) upon knockdown of TP53 [Gene ID=7157] gene by RNAi.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
1.364E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
145
|
28
|
M2983
|
Genes down-regulated in B lymphocytes stimulated by anti-IgM for 12h: wildtype versus ZFX [GeneID=7543] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.383E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
146
|
29
|
M6338
|
Genes down-regulated in Vd2 gamma delta T cells: untreated versus LPS.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.402E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
147
|
30
|
M6695
|
Genes up-regulated in endothelial cells: untreated versus IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.498E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
152
|
31
|
16273092-TableS1a
|
Human InVitro Bild06 206genes
|
GeneSigDB
|
1.719E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
163
|
32
|
M6702
|
Genes up-regulated in endothelial cells: interferon beta versus IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.740E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
164
|
33
|
M1113
|
Up-regulated genes from the set C (Fig. 5a): specific to cells expressing AF4-MLL [GeneID=4299;4297] fusion protein alone.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.868E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
170
|
34
|
M11585
|
Genes up-regulated in MCF7 cells (breast cancer) after stimulation with NRG1 [GeneID=3084].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.978E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
175
|
35
|
M6691
|
Genes down-regulated in fibroblasts: interferon alpha versus IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.160E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
183
|
36
|
M8175
|
Genes down-regulated in HEK293 cells expressing mutant NOD2 [GeneID=64127]: untreated versus muramyl dipeptide [PubChem=11620162] for 2h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.206E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
185
|
37
|
M9724
|
Genes down-regulated in CD4 [GeneID=920] SMARTA cells: naïve versus during acute infection of LCMV.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.206E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
185
|
38
|
M2819
|
Genes up-regulated in Sez-4 cells (T lymphocyte) that were first starved of IL2 [Gene ID=3558] and then stimulated with IL15 [Gene ID=3600].
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
2.325E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
190
|
39
|
M1356
|
Early prostate development genes (up-regulated at 6 hr dihydrotestosterone [PubChem=10635]) which are also up-regulated in high grade prostatic intraepithelial neoplasia (PIN) vs invasive cancer.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.332E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
1
|
6
|
40
|
M1179
|
Amplification hot spot 6: colocolized fragile sites and cancer genes in the 17p13-p11.1 region.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.332E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
1
|
6
|
41
|
15679045-Table1
|
Human Breast Tangir04 13genes Dexamethasone
|
GeneSigDB
|
2.332E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
1
|
6
|
42
|
M9978
|
Genes up-regulated in ITGAM+ [GeneID=3684] dendritic cells: control versus primary acute viral infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.349E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
191
|
43
|
M2848
|
Genes down-regulated in MOLM-14 cells (AML) with knockdown of HOXA9 [Gene ID=3205] gene by RNAi vs controls.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
2.398E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
193
|
44
|
M12824
|
Cluster 4 of method A: up-regulation of these genes in patients with non-small cell lung cancer (NSCLC) predicts good survival outcome.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.472E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
196
|
45
|
M3247
|
Genes up-regulated in comparison of IgM-memory B cells versus Ig isotype switched memory B cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.472E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
196
|
46
|
M3298
|
Genes up-regulated in comparison of unstimulated peripheral blood mononuclear cells (PBMC) 1 day after stimulation with YF17D vaccine versus PBMC 21 days after the stimulation.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.472E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
196
|
47
|
M9892
|
Genes up-regulated in plasmacytoid dendritic cells: wildtype versus GFI1 [GeneID=2672] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.497E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
197
|
48
|
M8226
|
Genes up-regulated in polarizing CD4 [GeneID=920] Th17 cells: wildtype untreated versus RORC [GeneID=6097] knockout treated by digoxin [PubChem=2724385].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.521E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
198
|
49
|
M9817
|
Genes up-regulated in CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell IRF4-KO versus CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.521E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
198
|
50
|
M7776
|
Genes up-regulated in macrophages after M. bovis BCG infection: 24h versus 48h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.521E-3
|
3.070E-2
|
2.337E-1
|
1.000E0
|
2
|
198
|