|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
16121216-TableS2
|
Human Leukemia Bradbury05 23genes RelatedProteinsMC
|
GeneSigDB
|
3.684E-16
|
6.264E-14
|
4.013E-13
|
1.253E-13
|
5
|
21
|
2
|
16121216-TableS1
|
Human Leukemia Bradbury05 23genes AssociatedProteinsPMBC
|
GeneSigDB
|
3.684E-16
|
6.264E-14
|
4.013E-13
|
1.253E-13
|
5
|
21
|
3
|
M5759
|
Genes up-regulated in comparison of untreated macrophages versus those treated with IL1.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.761E-2
|
1.769E-1
|
2.460E-1
|
2
|
199
|
4
|
M3631
|
Genes down-regulated in comparison of unstimulated CD8 T cells at 48 h versus CD8 T cells at 48 h after stimulation with IL12.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
5
|
M8568
|
Genes down-regulated in Th1 cells 5 days post polarization: control versus stimulated with anti-CD3 and anti-CD28.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
6
|
M8485
|
Genes down-regulated in B16 melanoma (day 3): untreated versus mock treatment during adoptive transfer therapy.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
7
|
M5274
|
Genes down-regulated in comparison of type 2 myeloid (T2M) cells treated with IL25 [GeneID=64806] versus macrophages treated with IL25 [GeneID=64806].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
8
|
M6351
|
Genes down-regulated in Vd2 gamma delta T cells: untreated versus phorbol myristate acetate and ionomycin [PubChem=4792;3733].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
9
|
M3636
|
Genes up-regulated in comparison of unstimulated CD8 T cells at 48 h versus CD8 T cells at 48 h after treatment with trichostatin A (TSA) [PubChem=5562].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.761E-2
|
1.769E-1
|
2.485E-1
|
2
|
200
|
10
|
18593951-TableS2
|
Human Ovarian Bonome08 263genes
|
GeneSigDB
|
9.564E-4
|
3.252E-2
|
2.084E-1
|
3.252E-1
|
2
|
229
|
11
|
M7068
|
Genes whose expression in optimally debulked ovarian tumors is associated with survival prognosis.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.102E-3
|
3.407E-2
|
2.183E-1
|
3.748E-1
|
2
|
246
|
12
|
M19724
|
Genes from the lightyellow module which are up-regulated in HAEC cells (primary aortic endothelium) after exposure to the oxidized 1-palmitoyl-2-arachidonyl-sn-3-glycerophosphorylcholine (oxPAPC).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.375E-3
|
4.645E-2
|
2.976E-1
|
8.075E-1
|
1
|
11
|
13
|
M1807
|
Genes important for ovulation, based on mouse models with female fertility defects.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.022E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
14
|
14
|
M4276
|
Genes within amplicon 6p24-p22 identified in a copy number alterations study of 191 breast tumor samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
21
|
15
|
16618758-Table1
|
Mouse StemCell Lien06 29genes
|
GeneSigDB
|
5.391E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
25
|
16
|
15073113-Table3
|
Human Testicular Sugimura04 30genes Teratoma
|
GeneSigDB
|
5.607E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
26
|
17
|
16357148-Table1a
|
Human Lung Noh05 43genes
|
GeneSigDB
|
6.037E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
28
|
18
|
15026349-Table1a
|
Human Lung Carson04 50genes Increase
|
GeneSigDB
|
6.467E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
30
|
19
|
16804116-Table3
|
Human Leukemia Chng06 33genes
|
GeneSigDB
|
6.467E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
30
|
20
|
M816
|
Top highly correlated genes positively associated with poor survival of patients with suboptimally debulked ovarian tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.682E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
31
|
21
|
M10541
|
Genes up-regulated in laser microdissected (LCM) samples of early primary breast tumors expressing ESR1 [GeneID=2099] vs the ESR1 negative ones.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.327E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
34
|
22
|
12917207-TableS5
|
Human Colon Glebov03 87genes
|
GeneSigDB
|
8.400E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
39
|
23
|
18803589-Table1
|
Human Viral Pazienza08 52genes
|
GeneSigDB
|
9.473E-3
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
44
|
24
|
17804543-Table2
|
Human Leukemia Achiron07 55genes
|
GeneSigDB
|
1.076E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
50
|
25
|
15358818-table2
|
Human Stomach Yuan04 54genes
|
GeneSigDB
|
1.097E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
51
|
26
|
18593951-Table1
|
Human Ovarian Bonome08 57genes SurvivalDebulking
|
GeneSigDB
|
1.119E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
52
|
27
|
M8077
|
Down-regulated genes whose expression correlated with histologic grade of invasive breast cancer tumors: comparison of grade 1 vs grade 3.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.119E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
52
|
28
|
16818640-Table1
|
Human Brain Foltz06 95genes
|
GeneSigDB
|
1.183E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
55
|
29
|
19893992-Table1
|
Human Viral Bellodi-Privato09 58genes
|
GeneSigDB
|
1.204E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
56
|
30
|
M1409
|
Cell proliferation genes up-regulated by histone deacetylase (HDAC) inhibitors SAHA and depsipeptide [PubChem=5311;5352062].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.226E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
57
|
31
|
M17866
|
UV only responding genes in primary fibroblasts from young donors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.333E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
62
|
32
|
M10332
|
Genes up-regulated in hyppocampus at late postnatal stages (clusters 11 and 15).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.354E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
63
|
33
|
M14970
|
IRF4 [GeneID=3662] target genes up-regulated in plasmacytoid dendritic cells compared to monocytes.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.397E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
65
|
34
|
11906190-Table1a-1
|
Human Colon Iizaka02 81genes
|
GeneSigDB
|
1.504E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
70
|
35
|
16581771-tableS1b
|
Mouse StemCell Si06 109genes
|
GeneSigDB
|
1.568E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
73
|
36
|
18722011-SuppTable2j
|
Human Leukemia Sanchez-Guijo08 77genes
|
GeneSigDB
|
1.589E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
74
|
37
|
M1600
|
Genes up-regulated in the nucleus accumbens (a major reward center in the brain) after 4 weeks of cocaine [PubChem=5760] treatment.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.610E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
75
|
38
|
19525976-SuppTable5b
|
Human Lung Chitale09 103genes
|
GeneSigDB
|
1.696E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
79
|
39
|
M15837
|
Genes up-regulated in normal keratinocytes immortalized by infection with the high risk HPV31 (human papilloma virus) strain.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.781E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
83
|
40
|
18410693-TableS11
|
Human Leukemia Kiiveri08 100genes Hyperdiploid >50Parallel
|
GeneSigDB
|
1.802E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
84
|
41
|
M1666
|
Strongly down-regulated at 8-96 h during differentiation of 3T3-L1 cells (fibroblast) into adipocytes.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.973E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
92
|
42
|
15374877-Table1
|
Human StemCell Manalo05 129genes
|
GeneSigDB
|
1.973E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
92
|
43
|
M2434
|
Transcripts dependent upon IRS1 and IRS2 [GeneID=3667, 8660] for normal expression in liver.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.100E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
98
|
44
|
M768
|
Genes commonly up-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [GeneID=5077;2308] fusion.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.100E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
98
|
45
|
M2809
|
Genes up-regulated in oligodendrocytes.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
2.143E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
100
|
46
|
16478745-SuppTable1-short
|
Human Breast Sotiriou06 128genes
|
GeneSigDB
|
2.228E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
104
|
47
|
M15148
|
Genes down-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [GeneID=1959].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.312E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
108
|
48
|
M1833
|
Spermatozoa genes, based on mouse models with male reproductive defects.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.440E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
114
|
49
|
15297395-SuppTable3
|
Human Lymphoma Sriuranpong04 170genes
|
GeneSigDB
|
2.461E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
115
|
50
|
M2915
|
Genes down-regulated in skin after injection of Trypanosoma cruzi (strain Y): wildtype (BALB/c) versus INFG [GeneID=3458] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.651E-2
|
4.645E-2
|
2.976E-1
|
1.000E0
|
1
|
124
|