|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M3278
|
Genes down-regulated in SaOS-2 cells (osteosarcoma) upon knockdown of YY1 [GeneID=7528] by RNAi.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.561E-8
|
1.259E-4
|
1.007E-3
|
1.270E-4
|
4
|
92
|
2
|
18339860-Table1
|
Human Bone deNigris08 118genes
|
GeneSigDB
|
1.499E-7
|
1.259E-4
|
1.007E-3
|
2.517E-4
|
4
|
109
|
3
|
M1982
|
Genes down-regulated in CD4+ [GeneID=920] T lymphocytes transduced with FOXP3 [GeneID=50943].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.085E-7
|
5.084E-4
|
4.069E-3
|
1.525E-3
|
3
|
42
|
4
|
M5939
|
Genes involved in p53 pathways and networks.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
1.705E-6
|
5.173E-4
|
4.140E-3
|
2.863E-3
|
4
|
200
|
5
|
20103679-ST3-D
|
Human Breast Wood10 71genes FoldChange>2
|
GeneSigDB
|
1.849E-6
|
5.173E-4
|
4.140E-3
|
3.104E-3
|
3
|
53
|
6
|
20103679-ST3-A
|
Human Breast Wood10 71genes CellCyle
|
GeneSigDB
|
1.849E-6
|
5.173E-4
|
4.140E-3
|
3.104E-3
|
3
|
53
|
7
|
12925741-Figure9
|
Human Lymphoma Jenner03 92genes
|
GeneSigDB
|
3.278E-6
|
7.863E-4
|
6.293E-3
|
5.504E-3
|
3
|
64
|
8
|
M2208
|
Potential targets of MIR302A [GeneID=407028].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.736E-6
|
1.204E-3
|
9.636E-3
|
9.631E-3
|
3
|
77
|
9
|
18234966-Table2
|
Mouse Ovarian Wang07 85genes
|
GeneSigDB
|
7.194E-6
|
1.342E-3
|
1.074E-2
|
1.208E-2
|
3
|
83
|
10
|
15705876-TableS6
|
Human Leukemia Passioura05 105genes
|
GeneSigDB
|
1.186E-5
|
1.982E-3
|
1.587E-2
|
1.992E-2
|
3
|
98
|
11
|
M15356
|
Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1, BRCA2, ATM, and CHEK2 [GeneID=672;675;472;11200]; the interactions were manually curated from the literature.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.299E-5
|
1.982E-3
|
1.587E-2
|
2.181E-2
|
3
|
101
|
12
|
21205295-TableS2
|
Mouse Viral Buonomo11 116genes
|
GeneSigDB
|
1.459E-5
|
2.042E-3
|
1.634E-2
|
2.450E-2
|
3
|
105
|
13
|
M1160
|
Non-histone proteins that are acetylated.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.150E-5
|
2.579E-3
|
2.064E-2
|
3.611E-2
|
2
|
15
|
14
|
M2476
|
Genes up-regulated in BEAS-2B cells (bronchial epithelium) stimulated with IL13 [GeneID=3596] on days 1 to 3, rested on days 4 and 5, and then restimulated on day 6 for 1 h before lysis (priming model).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.150E-5
|
2.579E-3
|
2.064E-2
|
3.611E-2
|
2
|
15
|
15
|
17638873-Table1a
|
Human StemCell Singer07 25genes
|
GeneSigDB
|
2.784E-5
|
3.116E-3
|
2.494E-2
|
4.674E-2
|
2
|
17
|
16
|
19749795-Table2
|
Human Leukemia Ueno09 26genes
|
GeneSigDB
|
3.131E-5
|
3.286E-3
|
2.630E-2
|
5.257E-2
|
2
|
18
|
17
|
11573962-Table3
|
Human Viral Sun01 27genes Cell Cycle-Related
|
GeneSigDB
|
4.722E-5
|
4.664E-3
|
3.733E-2
|
7.929E-2
|
2
|
22
|
18
|
M2995
|
Genes up-regulated in B lymphocytes stimulated by anti-IgM: ZFX [GeneID=7543] knockout (2h) versus wildtype (12h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
5.238E-5
|
4.886E-3
|
3.910E-2
|
8.794E-2
|
3
|
161
|
19
|
M7970
|
Genes down-regulated in BJAB cells (B-lymphoma) after glucose [PubChem=206] deprivation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.945E-5
|
5.065E-3
|
4.054E-2
|
9.981E-2
|
3
|
168
|
20
|
19695104-AF1-4
|
Human Breast Lin09 28genes
|
GeneSigDB
|
6.128E-5
|
5.065E-3
|
4.054E-2
|
1.029E-1
|
2
|
25
|
21
|
M16488
|
The lung adenocarcinoma TSP (tumor sequencing project) genes that were found significantly mutated by at least one method.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.637E-5
|
5.065E-3
|
4.054E-2
|
1.114E-1
|
2
|
26
|
22
|
18786252-Table4
|
Human Breast Liu08 26genes
|
GeneSigDB
|
6.637E-5
|
5.065E-3
|
4.054E-2
|
1.114E-1
|
2
|
26
|
23
|
M1594
|
Genes specifically up-regulated in FL5.12 cells (pro-B lymphocyte) by camptothecin [PubChem=2538].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.715E-5
|
5.632E-3
|
4.508E-2
|
1.295E-1
|
2
|
28
|
24
|
M11405
|
Candidate genes in the regions of copy number loss in gastric cancer cell lines.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.285E-5
|
5.647E-3
|
4.520E-2
|
1.391E-1
|
2
|
29
|
25
|
15140256-Table1
|
Human Colon VanErk04 36genes
|
GeneSigDB
|
8.874E-5
|
5.647E-3
|
4.520E-2
|
1.490E-1
|
2
|
30
|
26
|
M5520
|
Genes down-regulated and displaying decreased copy number in glioblastoma samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.484E-5
|
5.647E-3
|
4.520E-2
|
1.592E-1
|
2
|
31
|
27
|
M9229
|
Genes down-regulated in CD8 T cells at day 8 after LCMV infection: untreated versus interferon alpha.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
9.976E-5
|
5.647E-3
|
4.520E-2
|
1.675E-1
|
3
|
200
|
28
|
12136251-table5
|
Human Liver Li02 36genes
|
GeneSigDB
|
1.011E-4
|
5.647E-3
|
4.520E-2
|
1.698E-1
|
2
|
32
|
29
|
14695345-Table1a
|
Mouse Viral Politi04 40genes UpRegulated
|
GeneSigDB
|
1.011E-4
|
5.647E-3
|
4.520E-2
|
1.698E-1
|
2
|
32
|
30
|
M7404
|
Genes down-regulated in immortalized cell lines.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.076E-4
|
5.647E-3
|
4.520E-2
|
1.807E-1
|
2
|
33
|
31
|
18593912-Table1
|
Mouse StemCell Shachaf08 35genes
|
GeneSigDB
|
1.076E-4
|
5.647E-3
|
4.520E-2
|
1.807E-1
|
2
|
33
|
32
|
15741219-Table3
|
Human StemCell Roth05 33genes
|
GeneSigDB
|
1.076E-4
|
5.647E-3
|
4.520E-2
|
1.807E-1
|
2
|
33
|
33
|
15548366-Table3
|
Mouse Bladder Yao04 37genes
|
GeneSigDB
|
1.212E-4
|
6.156E-3
|
4.927E-2
|
2.035E-1
|
2
|
35
|
34
|
15896717-Table7
|
Human Leukemia Bal05 36genes
|
GeneSigDB
|
1.283E-4
|
6.156E-3
|
4.927E-2
|
2.155E-1
|
2
|
36
|
35
|
M1636
|
Genes in cluster 3: delayed up-regulation in HFW cells (fibroblast) by sodium arsenite [PubChem=26435].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.283E-4
|
6.156E-3
|
4.927E-2
|
2.155E-1
|
2
|
36
|
36
|
M2370
|
Oligodendrocyte core differentiation genes: up-regulated in Oli-neo cells (oligodendroglial precursor) at 10 h after treatment with PD174265, dexamethasone or isotretinoin [PubChem=4709, 5743, 5282379].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.587E-4
|
7.402E-3
|
5.924E-2
|
2.665E-1
|
2
|
40
|
37
|
15606925-Table3
|
Human Breast Bieche04 47genes
|
GeneSigDB
|
2.103E-4
|
9.542E-3
|
7.637E-2
|
3.530E-1
|
2
|
46
|
38
|
17638893-Table1
|
Human Breast Larsson07 47genes
|
GeneSigDB
|
2.196E-4
|
9.701E-3
|
7.764E-2
|
3.686E-1
|
2
|
47
|
39
|
18354499-Table3
|
Mouse Liver Knutson08 68genes
|
GeneSigDB
|
2.690E-4
|
1.158E-2
|
9.268E-2
|
4.516E-1
|
2
|
52
|
40
|
18221536-Table1
|
Human Breast Roll08 64genes
|
GeneSigDB
|
3.010E-4
|
1.247E-2
|
9.984E-2
|
5.054E-1
|
2
|
55
|
41
|
16705456-Table2
|
Human Leukemia Cao06 56genes
|
GeneSigDB
|
3.121E-4
|
1.247E-2
|
9.984E-2
|
5.239E-1
|
2
|
56
|
42
|
19530251 suppinfo4
|
Human Breast Rozenchan09 81genes
|
GeneSigDB
|
3.121E-4
|
1.247E-2
|
9.984E-2
|
5.239E-1
|
2
|
56
|
43
|
20103679-ST3-B
|
Human Breast Wood10 416genes
|
GeneSigDB
|
3.362E-4
|
1.313E-2
|
1.051E-1
|
5.644E-1
|
3
|
302
|
44
|
M2086
|
Genes up-regulated in ITNK cells (T-lymphocyte progenitors (DN3 cells) reprogrammed to natural killer (NK) cells by ablation of BCL11B [GeneID=64919] gene), compared to the parental DN3 cells.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.527E-4
|
1.337E-2
|
1.070E-1
|
5.922E-1
|
3
|
307
|
45
|
20548326-Table4
|
Human Stomach Bonelli10 61genes
|
GeneSigDB
|
3.583E-4
|
1.337E-2
|
1.070E-1
|
6.016E-1
|
2
|
60
|
46
|
M4493
|
Genes whose promoters were bound by E2F1 and E2F4 [GeneID=1869;1874] in the primary fibroblasts WI-38, by ChIP on chip assay.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.703E-4
|
1.352E-2
|
1.082E-1
|
6.218E-1
|
2
|
61
|
47
|
M1322
|
Genes down-regulated in 10T1/2 cells (multipotent mesoderma) by expression of SHH [GeneID=6469].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.077E-4
|
1.456E-2
|
1.166E-1
|
6.845E-1
|
2
|
64
|
48
|
12623842-Table2
|
Human BoneMarrow Magrangeas03 20genes
|
GeneSigDB
|
4.335E-4
|
1.516E-2
|
1.214E-1
|
7.279E-1
|
2
|
66
|
49
|
19695104-AF2
|
Human Breast Lin09 128genes
|
GeneSigDB
|
4.738E-4
|
1.623E-2
|
1.299E-1
|
7.955E-1
|
2
|
69
|
50
|
17638893-SuppTable5
|
Human Breast Larsson07 71genes
|
GeneSigDB
|
5.016E-4
|
1.684E-2
|
1.348E-1
|
8.422E-1
|
2
|
71
|