|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Overall Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Overall Top 200 Genes
|
BrainMap
|
2.323E-8
|
1.643E-5
|
1.197E-4
|
1.898E-5
|
4
|
182
|
2
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Granule Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Granule Top 200 Genes
|
BrainMap
|
8.324E-8
|
1.643E-5
|
1.197E-4
|
6.800E-5
|
4
|
250
|
3
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Cholinergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Cholinergic Top 200 Genes
|
BrainMap
|
9.155E-8
|
1.643E-5
|
1.197E-4
|
7.480E-5
|
4
|
256
|
4
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Serotonergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Serotonergic Top 200 Genes
|
BrainMap
|
1.203E-7
|
1.643E-5
|
1.197E-4
|
9.824E-5
|
4
|
274
|
5
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Inhibitory Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Inhibitory Top 200 Genes
|
BrainMap
|
1.220E-7
|
1.643E-5
|
1.197E-4
|
9.969E-5
|
4
|
275
|
6
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Noradrenergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Noradrenergic Top 200 Genes
|
BrainMap
|
1.408E-7
|
1.643E-5
|
1.197E-4
|
1.150E-4
|
4
|
285
|
7
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Non-peptidergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Non-peptidergic Top 200 Genes
|
BrainMap
|
1.617E-7
|
1.643E-5
|
1.197E-4
|
1.321E-4
|
4
|
295
|
8
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Neurofilament Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Neurofilament Top 200 Genes
|
BrainMap
|
1.753E-7
|
1.643E-5
|
1.197E-4
|
1.432E-4
|
4
|
301
|
9
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Excitatory Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Excitatory Top 200 Genes
|
BrainMap
|
1.824E-7
|
1.643E-5
|
1.197E-4
|
1.490E-4
|
4
|
304
|
10
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Interneuron-selective Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Interneuron-selective Top 200 Genes
|
BrainMap
|
2.103E-7
|
1.643E-5
|
1.197E-4
|
1.718E-4
|
4
|
315
|
11
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Dopaminergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Dopaminergic Top 200 Genes
|
BrainMap
|
2.212E-7
|
1.643E-5
|
1.197E-4
|
1.808E-4
|
4
|
319
|
12
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Nitrergic enteric Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Nitrergic enteric Top 200 Genes
|
BrainMap
|
2.993E-7
|
1.849E-5
|
1.347E-4
|
2.445E-4
|
4
|
344
|
13
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Peptidergic Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Peptidergic Top 200 Genes
|
BrainMap
|
3.099E-7
|
1.849E-5
|
1.347E-4
|
2.532E-4
|
4
|
347
|
14
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype R-LM border Cck inter Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype R-LM border Cck inter Top 200 Genes
|
BrainMap
|
3.171E-7
|
1.849E-5
|
1.347E-4
|
2.591E-4
|
4
|
349
|
15
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Non-border Cck inter Top 200 Genes
|
BrainMap BrainAtlas - Human / Mouse Linnarsson Neuron Neuron Subtype Non-border Cck inter Top 200 Genes
|
BrainMap
|
3.395E-7
|
1.849E-5
|
1.347E-4
|
2.774E-4
|
4
|
355
|
16
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Oligodendroglioma/4
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Oligodendroglioma/4
|
TCGA-Brain
|
6.717E-6
|
3.096E-4
|
2.255E-3
|
5.488E-3
|
3
|
193
|
17
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Astrocytoma/4
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Astrocytoma/4
|
TCGA-Brain
|
6.822E-6
|
3.096E-4
|
2.255E-3
|
5.573E-3
|
3
|
194
|
18
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Oligoastrocytoma/4
|
Sample Type by Project: Shred 1/TCGA-Brain/Low Grade Glioma/Oligoastrocytoma/4
|
TCGA-Brain
|
6.822E-6
|
3.096E-4
|
2.255E-3
|
5.573E-3
|
3
|
194
|
19
|
BrainMap BrainAtlas - Mouse McCarroll Neuron.excitatory Neuron.excitatory Subtype Excitatory.subGroup7 Top 200 Genes
|
BrainMap BrainAtlas - Mouse McCarroll Neuron.excitatory Neuron.excitatory Subtype Excitatory.subGroup7 Top 200 Genes
|
BrainMap
|
9.949E-6
|
4.278E-4
|
3.116E-3
|
8.128E-3
|
3
|
220
|
20
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells immature neurons immature neurons Subtype immature neurons s9 Top 200 Genes
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells immature neurons immature neurons Subtype immature neurons s9 Top 200 Genes
|
StanfordMouse+HumanSingleCells
|
2.518E-5
|
1.029E-3
|
7.492E-3
|
2.057E-2
|
3
|
300
|
21
|
BrainMap BrainAtlas - Mouse McCarroll Neuron.inhibitory Neuron.inhibitory Subtype Inhibitory.subGroup2 Top 200 Genes
|
BrainMap BrainAtlas - Mouse McCarroll Neuron.inhibitory Neuron.inhibitory Subtype Inhibitory.subGroup2 Top 200 Genes
|
BrainMap
|
3.111E-5
|
1.210E-3
|
8.815E-3
|
2.542E-2
|
3
|
322
|
22
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells mature neurons mature neurons Subtype mature neurons s7 Top 200 Genes
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells mature neurons mature neurons Subtype mature neurons s7 Top 200 Genes
|
StanfordMouse+HumanSingleCells
|
3.317E-5
|
1.232E-3
|
8.973E-3
|
2.710E-2
|
3
|
329
|
23
|
GSE7638 Midbrain human neurons vs stem cell-derived neurons Platform BrainMap - FluidigmC eNb Subtype eNb3 Top 40 Genes
|
GSE7638 Midbrain human neurons vs stem cell-derived neurons Platform BrainMap - FluidigmC eNb Subtype eNb3 Top 40 Genes
|
GSE76381_ESMoleculeCountsPMLog2
|
8.152E-5
|
2.896E-3
|
2.109E-2
|
6.660E-2
|
2
|
63
|
24
|
6mo cortical organoids wt 6mo cortical organoids wt nan static Subtype 2 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt nan static Subtype 2 Top 100 Genes
|
|
1.819E-4
|
6.193E-3
|
4.511E-2
|
1.486E-1
|
2
|
94
|
25
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype 2 static Subtype 2 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype 2 static Subtype 2 Top 100 Genes
|
|
1.898E-4
|
6.201E-3
|
4.517E-2
|
1.550E-1
|
2
|
96
|
26
|
6mo cortical organoids wt 6mo cortical organoids wt pan subtypes immature neuro precursors Overall Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt pan subtypes immature neuro precursors Overall Top 100 Genes
|
|
1.978E-4
|
6.214E-3
|
4.526E-2
|
1.616E-1
|
2
|
98
|
27
|
Human Kidney Development/Human Kidney Fetal Kidney Cell Atlas: (Tang et al 2018)/Human/Cell Subclass of Age of Cell Class of Tissue (subtype)/Collecting duct (CD)/late fetal/CD a
|
Human Kidney Development/Human Kidney Fetal Kidney Cell Atlas: (Tang et al 2018)/Human/Cell Subclass of Age of Cell Class of Tissue (subtype)/Collecting duct (CD)/late fetal/CD a
|
Fetal, Development
|
2.291E-4
|
6.931E-3
|
5.048E-2
|
1.871E-1
|
1
|
1
|
28
|
PCBC ratio EB from-plasmid vs EB from-ESC cfr-2X-p05
|
Embryoid Body Cells-method plasmid vs Embryoid Body Cells-method NA-Confounder removed-fold2.0 adjp0.05
|
PCBC_AltAnalyze
|
2.723E-4
|
7.945E-3
|
5.787E-2
|
2.225E-1
|
2
|
115
|
29
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s7 immature neuro precursors Subtype immature neuro precursors s7 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s7 immature neuro precursors Subtype immature neuro precursors s7 Top 100 Genes
|
|
2.916E-4
|
8.076E-3
|
5.882E-2
|
2.382E-1
|
2
|
119
|
30
|
Sample Type by Project: Shred 1/TCGA-Kidney/Renal Cell Carcinoma/Kidney Chromophobe/7/2
|
Sample Type by Project: Shred 1/TCGA-Kidney/Renal Cell Carcinoma/Kidney Chromophobe/7/2
|
TCGA-Kidney
|
3.014E-4
|
8.076E-3
|
5.882E-2
|
2.463E-1
|
2
|
121
|
31
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s6 immature neuro precursors Subtype immature neuro precursors s6 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s6 immature neuro precursors Subtype immature neuro precursors s6 Top 100 Genes
|
|
3.064E-4
|
8.076E-3
|
5.882E-2
|
2.503E-1
|
2
|
122
|
32
|
6mo cortical organoids wt 6mo cortical organoids wt mature-like mature-like Subtype M.1.6 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt mature-like mature-like Subtype M.1.6 Top 100 Genes
|
|
3.425E-4
|
8.744E-3
|
6.369E-2
|
2.798E-1
|
2
|
129
|
33
|
GSE7638 Midbrain human neurons vs stem cell-derived neurons Platform BrainMap - FluidigmC eNb Top 40
|
GSE7638 Midbrain human neurons vs stem cell-derived neurons Platform BrainMap - FluidigmC eNb Top 40
|
GSE76381_ESMoleculeCountsPMLog2
|
3.532E-4
|
8.744E-3
|
6.369E-2
|
2.886E-1
|
2
|
131
|
34
|
6mo cortical organoids wt 6mo cortical organoids wt mature-like mature-like Subtype M.1.5 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt mature-like mature-like Subtype M.1.5 Top 100 Genes
|
|
3.806E-4
|
9.146E-3
|
6.661E-2
|
3.110E-1
|
2
|
136
|
35
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup5/Prlr
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup5/Prlr
|
BrainMap
|
4.090E-4
|
9.415E-3
|
6.857E-2
|
3.342E-1
|
2
|
141
|
36
|
Sample Type by Project: Shred 1/TCGA-Mesothelium/Mesothelioma /Diffuse Malignant/1/1
|
Sample Type by Project: Shred 1/TCGA-Mesothelium/Mesothelioma /Diffuse Malignant/1/1
|
TCGA-Mesothelium
|
4.148E-4
|
9.415E-3
|
6.857E-2
|
3.389E-1
|
2
|
142
|
37
|
Human Kidney Cell Atlas/Human/Adult, Development, and Cancer types/Cell Type of Cell Class of Tissue/Kidney NK cell/Kidney Normal-Pelvis Wilms NK cell
|
Human Kidney Cell Atlas/Human/Adult, Development, and Cancer types/Cell Type of Cell Class of Tissue/Kidney NK cell/Kidney Normal-Pelvis Wilms NK cell
|
Adult, Development, and Cancer types
|
4.581E-4
|
9.960E-3
|
7.254E-2
|
3.742E-1
|
1
|
2
|
38
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup3/Gad2
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup3/Gad2
|
BrainMap
|
4.689E-4
|
9.960E-3
|
7.254E-2
|
3.831E-1
|
2
|
151
|
39
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s2 immature neuro precursors Subtype immature neuro precursors s2 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s2 immature neuro precursors Subtype immature neuro precursors s2 Top 100 Genes
|
|
4.814E-4
|
9.960E-3
|
7.254E-2
|
3.933E-1
|
2
|
153
|
40
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s1 immature neuro precursors Subtype immature neuro precursors s1 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s1 immature neuro precursors Subtype immature neuro precursors s1 Top 100 Genes
|
|
4.876E-4
|
9.960E-3
|
7.254E-2
|
3.984E-1
|
2
|
154
|
41
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s11 immature neuro precursors Subtype immature neuro precursors s11 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s11 immature neuro precursors Subtype immature neuro precursors s11 Top 100 Genes
|
|
5.003E-4
|
9.970E-3
|
7.262E-2
|
4.088E-1
|
2
|
156
|
42
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s4 immature neuro precursors Subtype immature neuro precursors s4 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s4 immature neuro precursors Subtype immature neuro precursors s4 Top 100 Genes
|
|
5.799E-4
|
1.054E-2
|
7.680E-2
|
4.738E-1
|
2
|
168
|
43
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup2/Phlda1
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup2/Phlda1
|
BrainMap
|
6.077E-4
|
1.054E-2
|
7.680E-2
|
4.965E-1
|
2
|
172
|
44
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup5/Bcl11b
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup5/Bcl11b
|
BrainMap
|
6.219E-4
|
1.054E-2
|
7.680E-2
|
5.081E-1
|
2
|
174
|
45
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup2/Cpne5
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Neuron/Neuron/inhibitory/subGroup2/Cpne5
|
BrainMap
|
6.434E-4
|
1.054E-2
|
7.680E-2
|
5.256E-1
|
2
|
177
|
46
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s5 immature neuro precursors Subtype immature neuro precursors s5 Top 100 Genes
|
6mo cortical organoids wt 6mo cortical organoids wt Subtype immature neuro precursors s5 immature neuro precursors Subtype immature neuro precursors s5 Top 100 Genes
|
|
6.434E-4
|
1.054E-2
|
7.680E-2
|
5.256E-1
|
2
|
177
|
47
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Mural/Mural/Acta2/Acta2,Rgs5//Abcc9
|
BrainMap/BrainAtlas - Mouse McCarroll/Lineage to Cells - regions (clevel sub)/Mural/Mural/Acta2/Acta2,Rgs5//Abcc9
|
BrainMap
|
6.950E-4
|
1.054E-2
|
7.680E-2
|
5.678E-1
|
2
|
184
|
48
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 2 Top 200 Genes
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 2 Top 200 Genes
|
StanfordMouse+HumanSingleCells
|
6.950E-4
|
1.054E-2
|
7.680E-2
|
5.678E-1
|
2
|
184
|
49
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 7 Top 200 Genes
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 7 Top 200 Genes
|
StanfordMouse+HumanSingleCells
|
6.950E-4
|
1.054E-2
|
7.680E-2
|
5.678E-1
|
2
|
184
|
50
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 8 Top 200 Genes
|
StanfordMouse+HumanSingleCells StanfordMouse+HumanSingleCells static Subtype 8 Top 200 Genes
|
StanfordMouse+HumanSingleCells
|
7.101E-4
|
1.054E-2
|
7.680E-2
|
5.801E-1
|
2
|
186
|