|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M16169
|
Genes able to induce cell death in an expression cDNA library screen.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.420E-4
|
2.975E-2
|
1.959E-1
|
5.778E-2
|
2
|
88
|
2
|
20215539-SuppTable2a
|
Human Lymphoma Dickens10 97genes
|
GeneSigDB
|
1.586E-4
|
2.975E-2
|
1.959E-1
|
6.454E-2
|
2
|
93
|
3
|
M3833
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 4 h versus DC cells stimulated with Pam3Csk4 (TLR1/2 agonist) at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.975E-2
|
1.959E-1
|
2.945E-1
|
2
|
199
|
4
|
M7683
|
Genes down-regulated in ankle joints: SPHK1 [GeneID=8877] versus wildtype over-expressing TNF [GeneID=7124].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.975E-2
|
1.959E-1
|
2.945E-1
|
2
|
199
|
5
|
M9994
|
Genes up-regulated during primary acute viral infection: B lymphocytes versus CD8 T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
2.975E-2
|
1.959E-1
|
2.945E-1
|
2
|
199
|
6
|
M3942
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 4 h versus DC cells stimulated with CpG DNA (TLR9 agonist) at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.975E-2
|
1.959E-1
|
2.975E-1
|
2
|
200
|
7
|
M9848
|
Genes down-regulated in CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell IRF4high versus CD40L and IL-2 IL-4 IL-5 stimulated at day 1 B cell wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.975E-2
|
1.959E-1
|
2.975E-1
|
2
|
200
|
8
|
M7711
|
Genes down-regulated in bone marrow-derived dendritic cellstreated by poly(IC): 0h versus 3h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.975E-2
|
1.959E-1
|
2.975E-1
|
2
|
200
|
9
|
M6094
|
Genes up-regulated in CD4 [GeneID=920] T cells activated by anti-CD3 and anti-CD28: IL4 [GeneID=3565] (2h) versus untreated (2h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.975E-2
|
1.959E-1
|
2.975E-1
|
2
|
200
|
10
|
M4454
|
Genes down-regulated in comparison of memory IgM B cells versus blood plasma cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
2.975E-2
|
1.959E-1
|
2.975E-1
|
2
|
200
|
11
|
M18491
|
Genes up-regulated by ESRRA [GeneID=2101] only.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.713E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
2
|
388
|
12
|
M19927
|
Genes down-regulated in HCT116 cells (colon cancer) upon expression of MIR34B or MIR34C [GeneID=407041;407042] microRNAs.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.790E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
2
|
460
|
13
|
16818663-Table2
|
Human Esophagus Joshi06 20genes
|
GeneSigDB
|
4.100E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
19
|
14
|
15656903-Table1
|
Human Lymphoma Melendez05 30genes
|
GeneSigDB
|
4.961E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
23
|
15
|
M10456
|
Genes up-regulated in both the patients in the multicentric hepatocellular carcinoma (HCC) group and those with multicentric recurrence.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.391E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
25
|
16
|
M9729
|
Genes negatively correlated with the asbestos exposure of lung cancer patients.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.037E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
28
|
17
|
M1187
|
Genes down-regulated in MCF7 cells (breast cancer, normal TP53 [GeneID=7157]) undergoing mitotic arrest and apoptosis after treatment with 100 nM docetaxel [PubChem=148124].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
38
|
18
|
M15147
|
Up-regulated genes in hepatocellular carcinoma (HCC) subclass G12, defined by unsupervised clustering
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.400E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
39
|
19
|
19286929-SuppTable2m
|
Mouse Lung Rangasamy09 43genes
|
GeneSigDB
|
8.400E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
39
|
20
|
M17507
|
Transcripts significantly enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to both chemotactic (lysophosphatidic acid, LPA [PubChem=3988]) and haptotactic (fibronectin, FN1 [GeneID=2335) migratory stimuli.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.259E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
43
|
21
|
M9642
|
Proteins that permeabilize mitochondria.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.259E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
43
|
22
|
17720243-Table1B
|
Human Lymphoma Bohling08 45genes
|
GeneSigDB
|
9.473E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
44
|
23
|
16707422-tableS1b
|
Human Prostate Hendriksen06 60genes
|
GeneSigDB
|
9.688E-3
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
45
|
24
|
20215539-SuppTable2b
|
Human Lymphoma Dickens10 50genes
|
GeneSigDB
|
1.033E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
48
|
25
|
15318932-Table3
|
Human Breast Abba04 52genes DCIS v IDC
|
GeneSigDB
|
1.076E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
50
|
26
|
M2868
|
Genes down-regulated in epithelial lung cancer cell lines upon over-expression of an oncogenic form of KRAS [Gene ID=3845] gene and knockdown of TBK1 [Gene ID=29110] gene by RNAi.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
1.076E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
50
|
27
|
11906190-Table2b-2
|
Human Colon Iizaka02 72genes
|
GeneSigDB
|
1.076E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
50
|
28
|
M6225
|
Genes up-regulated in Barrett's esophagus compared to the normal tissue.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.097E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
51
|
29
|
M2742
|
Genes up-regulated in hepatocellular carcinoma (HCC) induced by overexpression of MYC [GeneID=4609].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.162E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
54
|
30
|
12460921-Table1
|
Human Intestine Hasegawa02 61genes
|
GeneSigDB
|
1.204E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
56
|
31
|
11906190-Table2a-2
|
Human Colon Iizaka02 68genes
|
GeneSigDB
|
1.247E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
58
|
32
|
16548883-Table1
|
Human StemCell Leong06 58genes
|
GeneSigDB
|
1.247E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
58
|
33
|
12925741-Figure3
|
Human Lymphoma Jenner03 75genes
|
GeneSigDB
|
1.290E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
60
|
34
|
M3432
|
Genes up-regulated in hepatocellular carcinoma (HCC) tissue of MYC and TGFA [GeneID=4609;7039] double transgenic mice.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.311E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
61
|
35
|
M9544
|
Top down-regulated genes from principal component 3 (PCA3) which captures variation among different plasma cell tumors arising from overexpression of BCL2L1 and MYC [GeneID=598;4609].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.482E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
69
|
36
|
M5190
|
Genes up-regulated in at least 8 of 11 sarcoma cell lines by trabectedin [PubChem=3199].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.525E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
71
|
37
|
M346
|
Candidate genes in significant regions of chromosomal copy number gains in a panel of melanoma samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.568E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
73
|
38
|
16449976-SuppTable1
|
Human Esophagus Wang06 82genes
|
GeneSigDB
|
1.568E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
73
|
39
|
19861896-Table2
|
Human Brain Castells09 83genes
|
GeneSigDB
|
1.589E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
74
|
40
|
M15130
|
Transcripts enriched in pseudopodia of NIH/3T3 cells (fibroblast) in response to the chemotactic migration stimulus by lysophosphatidic acid (LPA) [PubChem=3988].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.589E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
74
|
41
|
18381418-Table1
|
Mouse Prostate Ouyang08 121genes
|
GeneSigDB
|
1.824E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
85
|
42
|
15705876-TableS3
|
Human Leukemia Passioura05 88genes
|
GeneSigDB
|
1.824E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
85
|
43
|
18590516-TableS1
|
Human Viral Ciccaglione08 102genes
|
GeneSigDB
|
1.866E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
87
|
44
|
19965622-TableS1a
|
Human LymphaticEndothelialCells Norrmen09 107genes
|
GeneSigDB
|
1.973E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
92
|
45
|
15297395-Table3
|
Human Lymphoma Sriuranpong04 109genes
|
GeneSigDB
|
1.994E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
93
|
46
|
M5910
|
Genes involved in protein secretion pathway.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
2.058E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
96
|
47
|
M1731
|
Cluster T7 of genes with similar expression profiles in thymic T lymphocytes after FOXP3 [GeneID=50943] loss of function (LOF).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.100E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
98
|
48
|
12077300-SuppTable2
|
Human Lymphoma Lossos02 152genes
|
GeneSigDB
|
2.121E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
99
|
49
|
M5949
|
Genes encoding components of peroxisome.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
2.228E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
104
|
50
|
M5923
|
Genes up-regulated by activation of the PI3K/AKT/mTOR pathway.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
2.249E-2
|
4.898E-2
|
3.227E-1
|
1.000E0
|
1
|
105
|