|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M9015
|
Genes up-regulated in CD4 [GeneID=920] cells after immunization: wildtype versus CTLA4 [GeneID=1493] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
4.746E-4
|
4.117E-2
|
2.921E-1
|
3.209E-1
|
2
|
161
|
2
|
M2941
|
Genes up-regulated in CD8 T cells: undergoing deletional tolerance versus activated.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
5.927E-4
|
4.117E-2
|
2.921E-1
|
4.007E-1
|
2
|
180
|
3
|
M6218
|
Genes up-regulated in polymorphonuclear leukocytes (24h) infection by A. phagocytophilum: heat killed versus live bacteria.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
6.950E-4
|
4.117E-2
|
2.921E-1
|
4.698E-1
|
2
|
195
|
4
|
M3809
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with LPS (TLR4 agonist) at 6 h versus DC cells stimulated with poly(I:C) (TLR3 agonist) at 6 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
4.117E-2
|
2.921E-1
|
4.892E-1
|
2
|
199
|
5
|
M6953
|
Genes up-regulated in plasmacytoit dendritic cells (4h): untreated versus CpG oligodeoxynucleotide 1826.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
4.117E-2
|
2.921E-1
|
4.892E-1
|
2
|
199
|
6
|
M8486
|
Genes down-regulated in B16 melanoma (day 3): untreated versus adoptive transfer therapy.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
7
|
M3735
|
Genes up-regulated in comparison of control dendritic cells (DC) at 4 h versus those stimulated with Pam3Csk4 (TLR1/2 agonist) at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
8
|
M6597
|
Genes up-regulated in bone marrow-derived macrophages: untreated (0 min) versus LPS (45 min).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
9
|
M9889
|
Genes up-regulated in colonic lamina propria cells sorted by CXCR6 [GeneID=10663]: high versus low.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
10
|
M9374
|
Genes down-regulated in follicular B lymphocytes: wildtype versus BCL6 [GeneID=604] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
11
|
M7042
|
Genes down-regulated in granulo-monocyte progenitors versus pro-B lymphocytes.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
12
|
M6042
|
Genes down-regulated in CD4 [GeneID=920] T cells activated by anti-CD3 and anti-CD28: IL4 [GeneID=3565] (48h) versus untreated (48h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.117E-2
|
2.921E-1
|
4.941E-1
|
2
|
200
|
13
|
20459861-Table2
|
Human Leukemia Cleaver10 05genes
|
GeneSigDB
|
1.080E-3
|
4.835E-2
|
3.430E-1
|
7.302E-1
|
1
|
5
|
14
|
M2269
|
Proteins significantly repressed by oxidative stress (hydrogen peroxide [PubChem=784] in 786-O cells (renal clear cell carcinoma, RCC) expressing VHL [GeneID=7428].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.296E-3
|
4.835E-2
|
3.430E-1
|
8.761E-1
|
1
|
6
|
15
|
M8582
|
Genes down-regulated in peripheral blood monocytes by CSF2RB (GM-CSF) and IL4 [GeneID=1437;3565].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.787E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
314
|
16
|
M12570
|
Genes down-regulated in T-PLL cells (T-cell prolymphocytic leukemia) bearing the inv(14)/t(14:14) chromosomal aberration.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.855E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
320
|
17
|
M5652
|
Genes which best discriminated between two groups of breast cancer according to the status of ESR1 and AR [GeneID=2099;367]: basal (ESR1- AR-) and luminal (ESR1+ AR+).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.971E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
330
|
18
|
19096012-TableS3
|
Human Viral Chetaille09 425genes
|
GeneSigDB
|
2.189E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
348
|
19
|
M10336
|
Genes down-regulated in epithelial ovarian cancer (EOC) biopsies: invasive (TOV) vs low malignant potential (LMP) tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.375E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
11
|
20
|
18959789-Table8
|
Human Viral Zekri08 20genes
|
GeneSigDB
|
2.375E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
11
|
21
|
19797726-SuppTable1b
|
Human Lymphoma VanLoo09 407genes
|
GeneSigDB
|
2.510E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
373
|
22
|
17327601-Table3
|
Human Colon DelRio07 14genes
|
GeneSigDB
|
2.806E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
13
|
23
|
14996721-Table1b
|
Human Kidney Struckmann04 13genes
|
GeneSigDB
|
2.806E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
13
|
24
|
M7559
|
Amplification hot spot 15: colocalized fragile sites and cancer genes in the 6p25-p11.1 region.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.806E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
13
|
25
|
M5275
|
Genes up-regulated in blood samples from bladder cancer patients.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.937E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
404
|
26
|
M19541
|
Genes commonly down-regulated in human alveolar rhabdomyosarcoma (ARMS) and its mouse model overexpressing PAX3-FOXO1 [GeneID=5077;2308] fusion.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.995E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
408
|
27
|
M19971
|
Genes up-regulated in peripheral blood mononucleocytes by HGF [GeneID=3082] compared to those regulated by CSF2RB (GM-CSF) and IL4 [GeneID=1437;3565].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.995E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
408
|
28
|
16423987-SuppTable3f
|
Human Leukemia Erkeland06 21genes
|
GeneSigDB
|
3.022E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
14
|
29
|
M18149
|
Genes up-regulated in peripheral blood monocytes by HGF [GeneID=3082].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.141E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
418
|
30
|
M2240
|
Genes up-regulated upon overexpression of PARVB [GeneID=29780] in MDA-MB-231 cells (breast cancer) cultured in 3D Matrigel only.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.305E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
429
|
31
|
M15981
|
Genes up-regulated in mesenchymal stem cells (MSC) engineered to express EWS-FLI1 [GeneID=2130;2321] fusion protein.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.320E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
430
|
32
|
M17836
|
Genes discriminating TP53 [GeneID=7157] status across various genotoxic stress agents.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.453E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
16
|
33
|
M4785
|
Genes down-regulated in monocyte-derived dendritic cells (MDDC) after stimulation with galecin-1 (lectin, LGALS1) [GeneID=3956] compared to that with bacterial lipopolysaccharide (LPS).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.839E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
463
|
34
|
15171711-Table4
|
Human Breast Cicatiello04 18genes
|
GeneSigDB
|
3.884E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
18
|
35
|
M2537
|
Key proteins in mammalian autophagosome formation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.100E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
19
|
36
|
M19016
|
Genes down-regulated in erythroid progenitor cells isolated from bone marrow of patients with Diamond-Blackfan anemia (DBA) and mutated RPS19 [GeneID=6223].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.290E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
2
|
490
|
37
|
15950496-Table2a
|
Human Leukemia Gebauer05 20genes SW1353Cells
|
GeneSigDB
|
4.315E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
20
|
38
|
M1523
|
Top 20 genes whose down-regulation correlated with gastrointestinal stromal tumors (GIST) and synovial sarcoma compared to other tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
20
|
39
|
17002788-Table2
|
Human Leukemia Hoffman06 30genes
|
GeneSigDB
|
4.530E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
21
|
40
|
M16962
|
Genes down-regulated during transition from L0 (non-tumor, not infected with HCV) to L1 (non-tumor, infected with HCV) in the development of hepatocellular carcinoma.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
21
|
41
|
17999412-GeneList
|
Human Breast Boersma08 24genes StromalGenes
|
GeneSigDB
|
4.530E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
21
|
42
|
16368891-TableS2
|
Human StemCell Cao06 27genes
|
GeneSigDB
|
4.961E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
23
|
43
|
15205470-Table4
|
Human Lymphoma Cole04 23genes
|
GeneSigDB
|
4.961E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
23
|
44
|
M13930
|
Down-regulated genes in HepG2 cells (liver cancer) overexpressing an oncogenic variant of tumor suppressor TIP30 [GeneID=10553] compared to its wild type form.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.176E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
24
|
45
|
M6761
|
Down-regulated genes highly correlated with acute lymphoblastic leukemia (ALL) vs acute myeloid leukemia (AML).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.176E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
24
|
46
|
M1478
|
Granule constituents expressed during mouse promyelocytic cell line differentiation to neutrophils.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.391E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
25
|
47
|
M1511
|
Genes down-regulated in glioblastoma cell lines displaying spherical growth (cluster-1) compared to those displaying semiadherent or adherent growth phenotype (cluster-2).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.607E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
26
|
48
|
15756260-Table1
|
Human Liver Shi05 30genes
|
GeneSigDB
|
5.822E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
27
|
49
|
16540645-Table4
|
Human Lung LopezRio06 35genes
|
GeneSigDB
|
6.037E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
28
|
50
|
18199535-Table2
|
Human StemCell Amundson08 30genes
|
GeneSigDB
|
6.252E-3
|
4.835E-2
|
3.430E-1
|
1.000E0
|
1
|
29
|