|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
15888489-Table1
|
Mouse Brain Chung05 134genes
|
GeneSigDB
|
1.946E-4
|
4.129E-2
|
2.645E-1
|
6.595E-2
|
2
|
103
|
2
|
15208663-SuppTable1b
|
Human Colon Kim04 235genes
|
GeneSigDB
|
4.067E-4
|
4.129E-2
|
2.645E-1
|
1.379E-1
|
2
|
149
|
3
|
M2395
|
Genes up-regulated in pancreatic islets upon knockout of HNF1A [GeneID=6927].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.865E-4
|
4.129E-2
|
2.645E-1
|
1.649E-1
|
2
|
163
|
4
|
M4181
|
Genes up-regulated in comparison of untreated CD4 [GeneID=920] T cells at 0 h versus the cells treated with IL4 [GeneID=3565] and anti-IL12 at 1 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.092E-4
|
4.129E-2
|
2.645E-1
|
2.404E-1
|
2
|
197
|
5
|
M3601
|
Genes up-regulated in comparison of CD8 T cells at 0 h versus those at 48 h after stimulation with antigen-B7-1.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
4.129E-2
|
2.645E-1
|
2.453E-1
|
2
|
199
|
6
|
M8390
|
Genes up-regulated in spleen dendritic cells: CD8- versus CD8+.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
4.129E-2
|
2.645E-1
|
2.478E-1
|
2
|
200
|
7
|
M1205
|
Genes up-regulated in Kelly cells (neuroblastoma) by overexpressing INHBA [GeneID=3624] off a plasmid vector.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.512E-3
|
4.737E-2
|
3.034E-1
|
5.125E-1
|
1
|
7
|
8
|
20460173-ImmPortCytokineReceptors
|
Human Immune Kong10 308genes ImmPort CytokineReceptors
|
GeneSigDB
|
1.665E-3
|
4.737E-2
|
3.034E-1
|
5.646E-1
|
2
|
303
|
9
|
17148579-TableS2
|
Human Leukemia Bomben07 11genes
|
GeneSigDB
|
2.375E-3
|
4.737E-2
|
3.034E-1
|
8.052E-1
|
1
|
11
|
10
|
20161705-Table4
|
Mouse EmbryonicStemCell Layden10 15genes
|
GeneSigDB
|
2.806E-3
|
4.737E-2
|
3.034E-1
|
9.514E-1
|
1
|
13
|
11
|
12067990-Table3
|
Human Ovarian Bayani02 26genes
|
GeneSigDB
|
3.238E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
15
|
12
|
M409
|
Top 20 genes expressed higher in epithelioid than in sarcomatoid mesothelioma samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.669E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
17
|
13
|
17823238-TableS5
|
Human EmbryonicStemCell Soh07 469genes
|
GeneSigDB
|
3.823E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
2
|
462
|
14
|
16540645-Table3
|
Human Lung LopezRio06 20genes
|
GeneSigDB
|
3.884E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
18
|
15
|
M2100
|
Gene promoters preferentially bound by a mutated form of TP53 [GeneID=7157] in SKBR3 cells (breast cancer).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
18
|
16
|
11779836-Table2
|
Human Ovarian Manderson02 24genes
|
GeneSigDB
|
5.176E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
24
|
17
|
M7250
|
Up-regulated in human fetal pituitary tissue, compared to adult pituitary tissue
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.252E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
29
|
18
|
M4303
|
Common target genes down-regulated by all three Runx family members (RUNX1, RUNX2, and RUNX3 [GeneID=861;860;864]) in MEF cells (embryonic fibroblasts).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.252E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
29
|
19
|
16178058-Table5
|
Human Brain Coco05 32genes
|
GeneSigDB
|
6.682E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
31
|
20
|
M9066
|
Genes down-regulated in A172 cells (glioma, does not express MGMT [GeneID=4255]) by carmustine [PubChem=2578] at 48 h.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.897E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
32
|
21
|
15837765-Table2
|
Human Pancreas Akada05 44genes
|
GeneSigDB
|
7.971E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
37
|
22
|
M1801
|
Up-regulated genes from the set D (Fig. 5a): specific signature shared by cells expressing MLL-AF4 [GeneID=4297;4299] alone and those expressing both MLL-AF4 and AF4-MLL fusion proteins.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.186E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
38
|
23
|
11983058-Table2
|
Human Leukemia Bo02 50genes ColonTumor/NormalClassSeparation
|
GeneSigDB
|
8.615E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
40
|
24
|
15980968-Table2b
|
Human Brain Bandres05 50genes
|
GeneSigDB
|
8.830E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
41
|
25
|
M2000
|
Genes with high-CpG-density promoters (HCP) bearing histone H3 K27 trimethylation mark (H327me3) in embryonic stem cells (ES).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.830E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
41
|
26
|
18560354-Table1
|
Mouse StemCell Wotton08 50genes
|
GeneSigDB
|
9.902E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
46
|
27
|
M2702
|
Genes down-regulated in primary epithelial breast cancer cell culture over-expressing activated CTNNB1 [Gene ID=1499] gene.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
9.902E-3
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
46
|
28
|
M5218
|
Genes bound by EWSR1-FLT1 [GeneID=2130;2321] fusion but whose expression did not change in STA-ET-7.2 cells (Ewing's sarcoma) after knockdown of EWSR1-FLT1 by RNAi.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.012E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
47
|
29
|
17970077-Table5
|
Human Viral Uchimura07 50genes
|
GeneSigDB
|
1.012E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
47
|
30
|
M8645
|
Genes up-regulated in the nucleus accumbens (a major reward center in brain) 2 weeks after induction of deltaFosB, a FOSB [GeneID=2354] splice variant.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.033E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
48
|
31
|
20068086-ST1-4
|
Human Breast Lee10 52genes
|
GeneSigDB
|
1.076E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
50
|
32
|
M6225
|
Genes up-regulated in Barrett's esophagus compared to the normal tissue.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.097E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
51
|
33
|
M16229
|
Primary up-regulated targets of TP53 [GeneID=7157] in the H1299 (lung cancer) cell line.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.247E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
58
|
34
|
17545589-Table2
|
Human Prostate Tamura07 70genes
|
GeneSigDB
|
1.397E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
65
|
35
|
20096135-Table2
|
Human Liver Utispan10 75genes
|
GeneSigDB
|
1.525E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
71
|
36
|
18849563-SuppTable5a
|
Human Lung not cancer Bhattacharya09 84genes COPDvsControl
|
GeneSigDB
|
1.525E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
71
|
37
|
17571080-SuppTable2c
|
Human Leukemia Sun07 90genes
|
GeneSigDB
|
1.546E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
72
|
38
|
18849563-SuppTable5c
|
Human Lung not cancer Bhattacharya09 84genes FEV1PercentPredictedinCOPDAllSubjects
|
GeneSigDB
|
1.546E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
72
|
39
|
18849563-SuppTable5b
|
Human Lung not cancer Bhattacharya09 84genes FEV1PercentPredictedorFEV1/FVC
|
GeneSigDB
|
1.546E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
72
|
40
|
18849563-SuppTable4
|
Human Lung not cancer Bhattacharya09 84genes
|
GeneSigDB
|
1.546E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
72
|
41
|
16449976-SuppTable1
|
Human Esophagus Wang06 82genes
|
GeneSigDB
|
1.568E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
73
|
42
|
15976005-Table3
|
Human Breast Graham05 82genes
|
GeneSigDB
|
1.589E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
74
|
43
|
M1968
|
Genes with high-CpG-density promoters (HCP) without H3 methylation marks at either H3K4 or H3K27 in MCV8.1 cells (induced pluripotent cells, iPS).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.717E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
80
|
44
|
M1451
|
Top 100 probe sets contrubuting to the negative side of the 2nd principal component; associated with adipocytic differentiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.717E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
80
|
45
|
M6222
|
Genes up-regulated in Jurkat cells (transformed T lymphocytes) after knockdown of BCL11B [GeneID=64919] by RNAi.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.738E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
81
|
46
|
11108479-SuppTable1
|
Human Colon Ben-Dor00 93genes
|
GeneSigDB
|
1.738E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
81
|
47
|
M73
|
Genes up-regulated in primary tissue culture of epidermal kerationcytes after UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.845E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
86
|
48
|
M6434
|
Top 100 genes positively associated with T-cell acute lymphoblastic leukemia MLL T-ALL) expressing MLL-ENL fusion [GeneID=4297;4298].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.866E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
87
|
49
|
17148579-TableS1
|
Human Leukemia Bomben07 122genes
|
GeneSigDB
|
1.909E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
89
|
50
|
M17860
|
Genes down-regulated in primary tissue culture of epidermal kerationcytes after UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.100E-2
|
4.737E-2
|
3.034E-1
|
1.000E0
|
1
|
98
|