|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M2114
|
Set 'Proliferation Cluster': genes defined in human breast tumor expression data.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.632E-6
|
2.760E-3
|
2.070E-2
|
8.779E-3
|
3
|
147
|
2
|
M6747
|
Genes down-regulated in cells from Flt3L Melanom injected mice: 33D1+ versus CD4 [GeneID=920] T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.311E-5
|
2.760E-3
|
2.070E-2
|
1.334E-2
|
3
|
169
|
3
|
M8928
|
Genes down-regulated in CD4 [GeneID=920] naïve versus Th17 enriched.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.431E-5
|
2.760E-3
|
2.070E-2
|
1.455E-2
|
3
|
174
|
4
|
M6756
|
Genes up-regulated in splenic CD 33D1+ dendritic cells versus CD4 [GeneID=920] T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.610E-5
|
2.760E-3
|
2.070E-2
|
1.638E-2
|
3
|
181
|
5
|
16121216-TableS1
|
Human Leukemia Bradbury05 23genes AssociatedProteinsPMBC
|
GeneSigDB
|
1.643E-5
|
2.760E-3
|
2.070E-2
|
1.671E-2
|
2
|
21
|
6
|
16121216-TableS2
|
Human Leukemia Bradbury05 23genes RelatedProteinsMC
|
GeneSigDB
|
1.643E-5
|
2.760E-3
|
2.070E-2
|
1.671E-2
|
2
|
21
|
7
|
M3027
|
Genes up-regulated in comparison of naive versus memory CD8 T cells (day 40+ following LCMV-Armstrong infection).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.139E-5
|
2.760E-3
|
2.070E-2
|
2.175E-2
|
3
|
199
|
8
|
M6014
|
Genes down-regulated in dendritic cells: CIITA [GeneID=4261] knockout versus I ab-/- mice.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
2.171E-5
|
2.760E-3
|
2.070E-2
|
2.208E-2
|
3
|
200
|
9
|
M11333
|
Oxidative stress genes down-regulated in ARPE-19 cells (retinal pigmented epithelium) in response to tert-butyl hydroperoxide (tBH) and H2O2 [PubChem=6410;784].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.919E-5
|
5.558E-3
|
4.170E-2
|
5.003E-2
|
2
|
36
|
10
|
17699800-Table1
|
Human Lung Joo07 54genes
|
GeneSigDB
|
1.114E-4
|
1.133E-2
|
8.503E-2
|
1.133E-1
|
2
|
54
|
11
|
16699793-Table2
|
Human pancreas Miyake06 72genes
|
GeneSigDB
|
1.930E-4
|
1.755E-2
|
1.317E-1
|
1.963E-1
|
2
|
71
|
12
|
19336569-SuppTable3
|
Human Breast Zhang09 81genes
|
GeneSigDB
|
2.154E-4
|
1.755E-2
|
1.317E-1
|
2.191E-1
|
2
|
75
|
13
|
19096012-TableS2
|
Human Viral Chetaille09 501genes
|
GeneSigDB
|
2.244E-4
|
1.755E-2
|
1.317E-1
|
2.282E-1
|
3
|
439
|
14
|
16618758-SuppTable1
|
Mouse StemCell Lien06 91genes
|
GeneSigDB
|
2.576E-4
|
1.871E-2
|
1.404E-1
|
2.620E-1
|
2
|
82
|
15
|
M14665
|
Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.883E-4
|
1.955E-2
|
1.466E-1
|
2.932E-1
|
3
|
478
|
16
|
M14079
|
Breast cancer compendium: 100 transcription regulators showing most correlated expression with the 9 'embryonic stem cell' transcription factors that are preferentially and coordinately overexpressed in the high-grade, ER-negative breast cancer tumors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.829E-4
|
2.337E-2
|
1.753E-1
|
3.894E-1
|
2
|
100
|
17
|
M15356
|
Genes constituting the LIT-Int network of proteins interacting with breast cancer reference proteins BRCA1, BRCA2, ATM, and CHEK2 [GeneID=672;675;472;11200]; the interactions were manually curated from the literature.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.906E-4
|
2.337E-2
|
1.753E-1
|
3.973E-1
|
2
|
101
|
18
|
M12804
|
Genes up-regulated in P14 nerves of transgenic mice having hypomorhic (reduced function) allele of EGR2 [GeneID=1959].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.465E-4
|
2.523E-2
|
1.893E-1
|
4.541E-1
|
2
|
108
|
19
|
18689800-TableS6
|
Human EmbryonicStemCell Thomas08 113genes
|
GeneSigDB
|
4.715E-4
|
2.524E-2
|
1.894E-1
|
4.796E-1
|
2
|
111
|
20
|
M3000
|
Genes up-regulated in B lymphocytes with ZFX [GeneID=7543] knockout: control versus stimulated by anti-IgM for 2h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.012E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
163
|
21
|
M17193
|
Down-regulated genes distinguishing in multiple myeloma (MM) samples with lower expression of TACI [GeneID=23495].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.126E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
172
|
22
|
M7103
|
Genes up-regulated in centroblasts versus centrocytes.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.152E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
174
|
23
|
M3268
|
Top 200 marker genes up-regulated in the 'proliferation' subclass of hepatocellular carcinoma (HCC); characterized by increased proliferation, high levels of serum AFP [GeneID=174], and chromosomal instability.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.205E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
178
|
24
|
M8126
|
Genes up-regulated in IL10 [GeneID=3586] knockout macrophages stimulated by LPS versus those also stimulated by IL10 [GeneID=3586].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.246E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
181
|
25
|
18519693-Table1
|
Human StemCell Mishra08 289genes
|
GeneSigDB
|
1.259E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
182
|
26
|
M1913
|
Genes down-regulated in neural stem cells (NSC) at 36 h after cre-lox knockout of TLX (NR2E1) [GeneID=7101].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.301E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
185
|
27
|
M2652
|
Genes down-regulated in MCF-7 cells (breast cancer) over-expressing CCND1 [Gene ID=595] gene.
|
MSigDB C6: Oncogenic Signatures (v6.0)
|
1.385E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
191
|
28
|
M5136
|
Genes up-regulated in comparison of peripheral blood mononuclear cells (PBMC) from healthy donors versus PBMCs from infanct with acute RSV infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.488E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
198
|
29
|
M4142
|
Genes down-regulated in comparison of dendritic cells (DC) stimulated with Gardiquimod (TLR7 agonist) at 0.5 h versus those stimulated with Gardiquimod (TLR7 agonist) at 8 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.502E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
199
|
30
|
M3192
|
Genes up-regulated in comparison of IgD- peripheral blood B cells versus dark zone germinal center B cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.502E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
199
|
31
|
M5142
|
Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from infancts with acute RSV infection versus PBMCs from infants with acute influenza infection.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.502E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
199
|
32
|
M4929
|
Genes down-regulated in comparison of peripheral blood mononuclear cells (PBMC) from TIV influenza vaccinee pre-vaccination versus those at day 3 post-vaccination.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
33
|
M3945
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 8 h versus DC cells stimulated with CpG DNA (TLR9 agonist) at 8 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
34
|
M8277
|
Genes up-regulated in B lymphocytes stimulated by anti-IgM for 8h: wildtype versus NFATC1 [GeneID=4772] knockout.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
35
|
M5862
|
Genes up-regulated in comparison of monocytes treated with 1 ng/ml LPS (TLR4 agonist) versus monocytes treated with anti-TREM1 [GeneID=54210] and 5000 ng/ml LPS (TLR4 agonist).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
36
|
M6896
|
Genes down-regulated in macrophages with IL10 [GeneID=3586] knockout in response to 10 min treatment by: LPS versus LPS and IL10 [GeneID=3586].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
37
|
M3509
|
Genes up-regulated in comparison of unstimulated macrophage cells versus macrophage cells stimulated with LPS (TLR4 agonist) for 360 min.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
38
|
M8075
|
Genes up-regulated in thymic implants from fetal liver versus those from fetal bone marrow.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
39
|
M5833
|
Genes up-regulated in comparison of effector CD8 T cells versus exhausted CD8 T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
40
|
M7289
|
Genes down-regulated in lymphocytes treated with medium for 24h: T conv versus T reg cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
41
|
M4523
|
Genes down-regulated in comparison of naive CD4 [GeneID=920] T cells versus stimulated CD4 [GeneID=920] Th1 cells at 12 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
42
|
M3840
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 12 h versus DC cells stimulated with Pam3Csk4 (TLR1/2 agonist) at 12 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
43
|
M5831
|
Genes up-regulated in comparison of naive CD8 T cells versus memory CD8 T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
44
|
M6930
|
Genes up-regulated in B lymphocytes: anti IgM versus PL2-3 (Chromatin IC).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
45
|
M5925
|
Genes encoding cell cycle related targets of E2F transcription factors.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
46
|
M8805
|
Genes down-regulated in Foxp3-ires-GFP T reg (FOXP3+ [GeneID=50943]): B6 versus NOD background.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
47
|
M3038
|
Genes up-regulated in comparison of naive CD8 T cells versus memory CD8 T cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
48
|
M7162
|
Genes down-regulated in CD4 [GeneID=920] T cells treated with HDAC inhibitors: 2h versus 12h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
49
|
M6157
|
Genes down-regulated in monocyte-derived macrophages: no priming versus primed by IFNG [GeneID=3458].
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|
50
|
M3480
|
Genes up-regulated in CD4 [GeneID=920] T cells from cord blood versus those from adult blood.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
1.517E-3
|
2.834E-2
|
2.126E-1
|
1.000E0
|
2
|
200
|