|
ID |
Name |
Source |
pValue |
FDR B&H |
FDR B&Y |
Bonferroni |
Genes from Input
|
Genes in Annotation
|
1
|
M11563
|
Genes involved in DNA repair, compiled manually by the authors.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
9.296E-11
|
4.611E-8
|
3.128E-7
|
4.611E-8
|
5
|
230
|
2
|
17313671-SuppTable1e
|
Human Leukemia Li07 12genes DNARepair
|
GeneSigDB
|
1.065E-9
|
2.642E-7
|
1.792E-6
|
5.284E-7
|
3
|
12
|
3
|
M9575
|
DNA repair genes whose promoters contain putative ZNF143 [GeneID=7702] binding sites.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
1.490E-7
|
2.463E-5
|
1.671E-4
|
7.389E-5
|
3
|
58
|
4
|
14562049-Table2
|
Human StemCell Young03 142genes
|
GeneSigDB
|
1.564E-6
|
1.940E-4
|
1.316E-3
|
7.760E-4
|
3
|
126
|
5
|
M5898
|
Genes involved in DNA repair.
|
MSigDB H: Hallmark Gene Sets (v6.0)
|
2.646E-6
|
2.624E-4
|
1.781E-3
|
1.312E-3
|
3
|
150
|
6
|
17906199-SuppTable1
|
Human Lung Hsu07 45genes
|
GeneSigDB
|
2.618E-5
|
1.871E-3
|
1.269E-2
|
1.299E-2
|
2
|
38
|
7
|
M9150
|
Genes from common genomic gains observed in a meta analyis of copy number alterations across a panel of different cancer cell lines and tumor samples.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.640E-5
|
1.871E-3
|
1.269E-2
|
1.310E-2
|
3
|
323
|
8
|
14993899-TableS1
|
Human Futreal04 427genes ConsensusCancerGenes
|
GeneSigDB
|
3.773E-5
|
2.339E-3
|
1.587E-2
|
1.871E-2
|
3
|
364
|
9
|
16434974-Table3
|
Human StemCell Enk06 67genes
|
GeneSigDB
|
7.258E-5
|
4.000E-3
|
2.714E-2
|
3.600E-2
|
2
|
63
|
10
|
M5451
|
Survival signature genes defined in adjacent liver tissue: genes correlated with good survival of hepatocellular carcinoma (HCC) patients.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.342E-4
|
1.038E-2
|
7.040E-2
|
1.161E-1
|
2
|
113
|
11
|
M8411
|
Genes down-regulated in urothelial cell carcinoma (UCC) tumors with LOH on 9q as compared to the tumors showing retention.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.468E-4
|
1.038E-2
|
7.040E-2
|
1.224E-1
|
2
|
116
|
12
|
M12313
|
Genes up-regulated in MEWO cells (melanoma) after 96 h of methionine [PubChem=876] deprivation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
2.510E-4
|
1.038E-2
|
7.040E-2
|
1.245E-1
|
2
|
117
|
13
|
M13537
|
Genes up-regulated in MEWO cells (melanoma) after 48h of methionine [PubChem=876] deprivation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.004E-4
|
1.146E-2
|
7.776E-2
|
1.490E-1
|
2
|
128
|
14
|
M19867
|
Genes down-regulated in acute myeloid leukemia (AML) with respect to cellular localization of NPM1 [GeneID=4869]: cytoplasmic vs. nucleolar.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
6.192E-4
|
1.450E-2
|
9.838E-2
|
3.071E-1
|
2
|
184
|
15
|
M5182
|
Genes down-regulated in comparison of dendritic cells exposed to L. major versus macrophages exposed to L. major.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
1.450E-2
|
9.838E-2
|
3.589E-1
|
2
|
199
|
16
|
M8430
|
Genes down-regulated in CD8 T cells: stem cell memory versus effector memory.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.236E-4
|
1.450E-2
|
9.838E-2
|
3.589E-1
|
2
|
199
|
17
|
M3488
|
Genes down-regulated in naive CD4 [GeneID=920] T cells from adult blood versus thymic stromal cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
18
|
M8434
|
Genes down-regulated in CD8 T cells: central memory versus effector memory.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
19
|
M3277
|
Genes up-regulated in comparison of unstimulated peripheral blood mononuclear cells (PBMC) versus PBMC stimulated with YF17D vaccine.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
20
|
M4084
|
Genes up-regulated in comparison of dendritic cells (DC) stimulated with poly(I:C) (TLR3 agonist) at 0.5 h versus those stimulated at 4 h.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
21
|
M9313
|
Genes up-regulated in follicular B cells versus day 40 germinal center B cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
22
|
M3507
|
Genes up-regulated in comparison of unstimulated macrophage cells versus macrophage cells stimulated with LPS (TLR4 agonist) for 240 min.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
23
|
M8427
|
Genes down-regulated in pre-B cells: STAT5 knockout versus wildtype.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
24
|
M5842
|
Genes up-regulated in comparison of virus specific (gp33) exhausted CD8 T cells versus the virus specific (gp276) cells.
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
25
|
M7665
|
Genes up-regulated in the in vitro follicular dendritic cells from peripheral lymph nodes: non-stimulated versus tretinoin [PubChem=444795] and Pam2CSK4 (96h).
|
MSigDB C7: Immunologic Signatures (v6.0)
|
7.309E-4
|
1.450E-2
|
9.838E-2
|
3.625E-1
|
2
|
200
|
26
|
M9473
|
Genes enriched in embryonic, neural and hematopoietic stem cells.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
7.751E-4
|
1.479E-2
|
1.003E-1
|
3.844E-1
|
2
|
206
|
27
|
M1757
|
Genes up-regulated after Cre-lox knockout of APC [GeneID=324] in the small intestine that require functional MYC [GeneID=4609].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
8.053E-4
|
1.479E-2
|
1.004E-1
|
3.994E-1
|
2
|
210
|
28
|
17571080-SuppTable2b
|
Human Leukemia Sun07 283genes
|
GeneSigDB
|
1.058E-3
|
1.875E-2
|
1.272E-1
|
5.250E-1
|
2
|
241
|
29
|
18056454-Table2
|
Human Breast Mori07 09genes
|
GeneSigDB
|
1.728E-3
|
2.955E-2
|
2.005E-1
|
8.570E-1
|
1
|
8
|
30
|
15831697-TableS2
|
Human Leukemia Alcalay05 369genes
|
GeneSigDB
|
1.890E-3
|
3.124E-2
|
2.120E-1
|
9.372E-1
|
2
|
323
|
31
|
14683528-Table2a
|
Human Mouth Huang03 18genes
|
GeneSigDB
|
2.591E-3
|
4.145E-2
|
2.812E-1
|
1.000E0
|
1
|
12
|
32
|
18794137-SuppTable1b
|
Human Breast Creighton08 623genes
|
GeneSigDB
|
2.852E-3
|
4.421E-2
|
2.999E-1
|
1.000E0
|
2
|
398
|
33
|
M4625
|
Genes whose expression peaked at 20 min after stimulation of MCF10A cells with EGF [GeneID=1950].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.022E-3
|
4.542E-2
|
3.082E-1
|
1.000E0
|
1
|
14
|
34
|
M8463
|
Cluster G3: genes increasingly up-regulated in NHEK cells (normal keratinocyte) after 6 h time point upon UV-B irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.238E-3
|
4.588E-2
|
3.113E-1
|
1.000E0
|
1
|
15
|
35
|
15896717-Table6
|
Human Leukemia Bal05 15genes
|
GeneSigDB
|
3.238E-3
|
4.588E-2
|
3.113E-1
|
1.000E0
|
1
|
15
|
36
|
M5304
|
Amplification hot spot 8: colocolized fragile sites and cancer genes in the 9q11-34 region.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.884E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
18
|
37
|
M3062
|
The 'group 2 set' of genes associated with acquired endocrine therapy resistance in breast tumors expressing ESR1 and ERBB2 [GeneID=2099;2064].
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
3.970E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
2
|
471
|
38
|
M14665
|
Genes up-regulated in lymphoblastoid cells from the European population compared to those from the Asian population.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.087E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
2
|
478
|
39
|
M3898
|
Genes down-regulated in NHEK cells (normal epidermal keratinocytes) after UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.205E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
2
|
485
|
40
|
M18954
|
Genes up-regulated in HCT116 cells (colon cancer) after treatment with amifostine [PubChem=2141] depending on the presence of TP53 [GeneID=7157]: TP53-positive vs TP53-null cells.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
20
|
41
|
M9634
|
Cluster 4: genes changed in primary keratinocytes by UVB irradiation.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.315E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
20
|
42
|
16969345-Table2Benign
|
Human Ovarian Biade06 22genes benign
|
GeneSigDB
|
4.315E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
20
|
43
|
M1680
|
Genes up-regulated by TSA alone [PubChem=5562], with non-hypermethylated promoters, in RKO cells (colorectal cancer).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.530E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
21
|
44
|
15077194-table1
|
Human StemCell Scian04 29genes
|
GeneSigDB
|
4.530E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
21
|
45
|
M2059
|
Nearest neighbors of HOX11 [GeneID=3195], based on the close agreement of their expression profiles with that of HOX11 in pediatric T cell acute lymphoblastic leukemia (T-ALL).
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.961E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
23
|
46
|
M2837
|
Genes up-regulated in oncocytic follicular carcinoma (FTC) vs mitochondrial-rich papillary carcinoma (PTC) types of thyroid cancer.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
4.961E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
23
|
47
|
18234966-Table3
|
Mouse Ovarian Wang07 25genes
|
GeneSigDB
|
5.391E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
25
|
48
|
M6840
|
Genes changed similarly in DU-145 cells (prostate cancer) in the absence and presence of a dominant negative form of AKT1 [GeneID=207] upon exposure to HGF [GeneID=3082] for 6 h.
|
MSigDB C2: CGP Curated Gene Sets (v6.0)
|
5.607E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
26
|
49
|
20081812-Table4
|
Human Lymphoma Sagaert10 38genes
|
GeneSigDB
|
5.822E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
27
|
50
|
11906190-Table1b-1
|
Human Colon Iizaka02 31genes
|
GeneSigDB
|
5.822E-3
|
4.878E-2
|
3.309E-1
|
1.000E0
|
1
|
27
|